[MacPorts] #51719: hdfeos configure fails

MacPorts noreply at macports.org
Mon Jun 27 10:24:17 PDT 2016 

#51719: hdfeos configure fails
-----------------------+--------------------------------
 Reporter:  smasson@…  |      Owner:  macports-tickets@…
     Type:  defect     |     Status:  new
 Priority:  Normal     |  Milestone:
Component:  ports      |    Version:  2.3.4
 Keywords:             |       Port:  hdfeos
-----------------------+--------------------------------
 hdfeos 2.19_1 configure fails for a problem with h4cc. [[BR]]
 Adding CC=/opt/local/bin/h4cc in the configure call seems to work...
 [[BR]]
 I saw #51600 where you say "Stopped using h4cc in hdfeos", I guess there
 is some link...

 Bellow is my config.log


 {{{
 version:1
 :msg:main --->  Computing dependencies for hdfeos:info:main .:debug:main
 hdfeos has no conflicts
 :debug:main Searching for dependency: hdf4
 :debug:main Found Dependency: receipt exists for hdf4
 :debug:main Searching for dependency: szip
 :debug:main Found Dependency: receipt exists for szip
 :msg:main
 :debug:main Executing org.macports.main (hdfeos)
 :debug:main changing euid/egid - current euid: 0 - current egid: 0
 :debug:main egid changed to: 501
 :debug:main euid changed to: 503
 :debug:main Skipping completed org.macports.archivefetch (hdfeos)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.fetch (hdfeos)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.checksum (hdfeos)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.extract (hdfeos)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.patch (hdfeos)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:configure configure phase started at Mon Jun 27 10:19:44 PDT 2016
 :notice:configure --->  Configuring hdfeos
 :debug:configure Using compiler 'Xcode Clang'
 :debug:configure Executing proc-pre-org.macports.configure-configure-0
 :debug:configure Active variants check for source-type install considers
 depends_fetch depends_extract depends_lib depends_build depends_run: hdf4
 szip
 :debug:configure hdf4 is installed with the following variants:
 +gcc48+szip
 :debug:configure   required: szip, forbidden:
 :debug:configure   accepted
 :debug:configure Executing org.macports.configure (hdfeos)
 :debug:configure Environment:
 CC='/usr/bin/clang'
 CC_PRINT_OPTIONS='YES'
 CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_hdfeos/hdfeos/work/.CC_PRINT_OPTIONS'
 CFLAGS='-pipe -Os -arch x86_64'
 CPATH='/opt/local/include'
 CPPFLAGS='-I/opt/local/include'
 CXX='/usr/bin/clang++'
 CXXFLAGS='-pipe -Os -arch x86_64 -stdlib=libc++'
 F77FLAGS='-m64'
 F90FLAGS='-pipe -Os -m64'
 FCFLAGS='-pipe -Os -m64'
 FFLAGS='-pipe -Os'
 INSTALL='/usr/bin/install -c'
 LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64'
 LIBRARY_PATH='/opt/local/lib'
 MACOSX_DEPLOYMENT_TARGET='10.9'
 OBJC='/usr/bin/clang'
 OBJCFLAGS='-pipe -Os -arch x86_64'
 OBJCXX='/usr/bin/clang++'
 OBJCXXFLAGS='-pipe -Os -arch x86_64 -stdlib=libc++'
 :debug:configure Assembled command: 'cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_hdfeos/hdfeos/work/hdfeos"
 && ./configure --prefix=/opt/local --with-hdf4=/opt/local --with-
 jpeg=/opt/local --with-zlib=/opt/local --enable-shared --disable-
 dependency-tracking --with-szlib=/opt/local'
 :debug:configure Executing command line:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_hdfeos/hdfeos/work/hdfeos"
 && ./configure --prefix=/opt/local --with-hdf4=/opt/local --with-
 jpeg=/opt/local --with-zlib=/opt/local --enable-shared --disable-
 dependency-tracking --with-szlib=/opt/local
 :info:configure checking for a BSD-compatible install... /usr/bin/install
 -c
 :info:configure checking whether build environment is sane... yes
 :info:configure checking for gawk... gawk
 :info:configure checking whether make sets $(MAKE)... yes
 :info:configure checking whether to enable maintainer-specific portions of
 Makefiles... no
 :info:configure checking build system type... i386-apple-darwin13.4.0
 :info:configure checking host system type... i386-apple-darwin13.4.0
 :info:configure checking for style of include used by make... GNU
 :info:configure checking for gcc... /usr/bin/clang
 :info:configure checking for C compiler default output file name... a.out
 :info:configure checking whether the C compiler works... yes
 :info:configure checking whether we are cross compiling... no
 :info:configure checking for suffix of executables...
 :info:configure checking for suffix of object files... o
 :info:configure checking whether we are using the GNU C compiler... yes
 :info:configure checking whether /usr/bin/clang accepts -g... yes
 :info:configure checking for /usr/bin/clang option to accept ISO C89...
 none needed
 :info:configure checking dependency style of /usr/bin/clang... none
 :info:configure checking for a sed that does not truncate output...
 /opt/local/bin/gsed
 :info:configure checking for grep that handles long lines and -e...
 /usr/bin/grep
 :info:configure checking for egrep... /usr/bin/grep -E
 :info:configure checking for ld used by /usr/bin/clang...
 /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
 :info:configure checking if the linker
 (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld)
 is GNU ld... no
 :info:configure checking for
 /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
 option to reload object files... -r
 :info:configure checking for BSD-compatible nm... /opt/local/bin/nm
 :info:configure checking whether ln -s works... yes
 :info:configure checking how to recognise dependent libraries... pass_all
 :info:configure checking how to run the C preprocessor... /usr/bin/clang
 -E
 :info:configure checking for ANSI C header files... yes
 :info:configure checking for sys/types.h... yes
 :info:configure checking for sys/stat.h... yes
 :info:configure checking for stdlib.h... yes
 :info:configure checking for string.h... yes
 :info:configure checking for memory.h... yes
 :info:configure checking for strings.h... yes
 :info:configure checking for inttypes.h... yes
 :info:configure checking for stdint.h... yes
 :info:configure checking for unistd.h... yes
 :info:configure checking dlfcn.h usability... yes
 :info:configure checking dlfcn.h presence... yes
 :info:configure checking for dlfcn.h... yes
 :info:configure checking whether we are using the GNU C++ compiler... yes
 :info:configure checking whether /usr/bin/clang++ accepts -g... yes
 :info:configure checking dependency style of /usr/bin/clang++... none
 :info:configure checking how to run the C++ preprocessor...
 /usr/bin/clang++ -E
 :info:configure checking for g77... no
 :info:configure checking for xlf... no
 :info:configure checking for f77... no
 :info:configure checking for frt... no
 :info:configure checking for pgf77... no
 :info:configure checking for cf77... no
 :info:configure checking for fort77... no
 :info:configure checking for fl32... no
 :info:configure checking for af77... no
 :info:configure checking for xlf90... no
 :info:configure checking for f90... no
 :info:configure checking for pgf90... no
 :info:configure checking for pghpf... no
 :info:configure checking for epcf90... no
 :info:configure checking for gfortran... gfortran
 :info:configure checking whether we are using the GNU Fortran 77
 compiler... yes
 :info:configure checking whether gfortran accepts -g... yes
 :info:configure checking the maximum length of command line arguments...
 65536
 :info:configure checking command to parse /opt/local/bin/nm output from
 /usr/bin/clang object... ok
 :info:configure checking for objdir... .libs
 :info:configure checking for ar... ar
 :info:configure checking for ranlib... ranlib
 :info:configure checking for strip... strip
 :info:configure checking if /usr/bin/clang static flag  works... yes
 :info:configure checking if /usr/bin/clang supports -fno-rtti -fno-
 exceptions... yes
 :info:configure checking for /usr/bin/clang option to produce PIC... -fno-
 common
 :info:configure checking if /usr/bin/clang PIC flag -fno-common works...
 yes
 :info:configure checking if /usr/bin/clang supports -c -o file.o... yes
 :info:configure checking whether the /usr/bin/clang linker
 (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld)
 supports shared libraries... yes
 :info:configure checking dynamic linker characteristics... darwin13.4.0
 dyld
 :info:configure checking how to hardcode library paths into programs...
 immediate
 :info:configure checking whether stripping libraries is possible... yes
 :info:configure checking if libtool supports shared libraries... yes
 :info:configure checking whether to build shared libraries... yes
 :info:configure checking whether to build static libraries... yes
 :info:configure configure: creating libtool
 :info:configure appending configuration tag "CXX" to libtool
 :info:configure checking for ld used by /usr/bin/clang++...
 /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
 :info:configure checking if the linker
 (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld)
 is GNU ld... no
 :info:configure checking whether the /usr/bin/clang++ linker
 (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld)
 supports shared libraries... yes
 :info:configure checking for /usr/bin/clang++ option to produce PIC...
 -fno-common
 :info:configure checking if /usr/bin/clang++ PIC flag -fno-common works...
 yes
 :info:configure checking if /usr/bin/clang++ supports -c -o file.o... yes
 :info:configure checking whether the /usr/bin/clang++ linker
 (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld)
 supports shared libraries... yes
 :info:configure checking dynamic linker characteristics... darwin13.4.0
 dyld
 :info:configure checking how to hardcode library paths into programs...
 immediate
 :info:configure checking whether stripping libraries is possible... yes
 :info:configure appending configuration tag "F77" to libtool
 :info:configure checking if libtool supports shared libraries... yes
 :info:configure checking whether to build shared libraries... yes
 :info:configure checking whether to build static libraries... yes
 :info:configure checking for gfortran option to produce PIC... -fno-common
 :info:configure checking if gfortran PIC flag -fno-common works... yes
 :info:configure checking if gfortran supports -c -o file.o... yes
 :info:configure checking whether the gfortran linker
 (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld)
 supports shared libraries... yes
 :info:configure checking dynamic linker characteristics... darwin13.4.0
 dyld
 :info:configure checking how to hardcode library paths into programs...
 immediate
 :info:configure checking whether stripping libraries is possible... yes
 :info:configure checking for ceil in -lm... yes
 :info:configure checking for jpeg_set_defaults in -ljpeg... yes
 :info:configure checking zlib.h usability... yes
 :info:configure checking zlib.h presence... yes
 :info:configure checking for zlib.h... yes
 :info:configure checking for compress2 in -lz... yes
 :info:configure checking for fc2Fortran macro... not defined
 :info:configure checking for /opt/local/include/szlib.h... yes
 :info:configure checking szlib.h usability... yes
 :info:configure checking szlib.h presence... yes
 :info:configure checking for szlib.h... yes
 :info:configure checking for SZ_BufftoBuffCompress in -lsz... yes
 :info:configure checking for gawk... (cached) gawk
 :info:configure checking for h4cc... /usr/bin/clang
 :info:configure configure: error: CC is not h4cc
 :info:configure Command failed:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_hdfeos/hdfeos/work/hdfeos"
 && ./configure --prefix=/opt/local --with-hdf4=/opt/local --with-
 jpeg=/opt/local --with-zlib=/opt/local --enable-shared --disable-
 dependency-tracking --with-szlib=/opt/local
 :info:configure Exit code: 1
 :error:configure Failed to configure hdfeos, consult
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_hdfeos/hdfeos/work/hdfeos/config.log
 :error:configure org.macports.configure for port hdfeos returned:
 configure failure: command execution failed
 :debug:configure Error code: NONE
 :debug:configure Backtrace: configure failure: command execution failed
     while executing
 "portconfigure::configure_main org.macports.configure"
     ("eval" body line 1)
     invoked from within
 "eval $procedure $targetname"
 :info:configure Warning: targets not executed for hdfeos:
 org.macports.install org.macports.configure org.macports.build
 org.macports.destroot
 :notice:configure Please see the log file for port hdfeos for details:
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_hdfeos/hdfeos/main.log

 }}}

-- 
Ticket URL: <https://trac.macports.org/ticket/51719>
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