[MacPorts] #52255: cannot install octave-optiminterp
MacPorts
noreply at macports.org
Thu Sep 15 17:00:33 CEST 2016
#52255: cannot install octave-optiminterp
-----------------------------+--------------------------------
Reporter: MacPorts@… | Owner: macports-tickets@…
Type: defect | Status: new
Priority: Normal | Milestone:
Component: ports | Version: 2.3.4
Keywords: optiminterp sed | Port: octave-optiminterp
-----------------------------+--------------------------------
port install octave-optiminterp fails - details:
{{{
> port installed | grep octave
octave
@4.0.3_0+accelerate+app+docs+fltk+gfortran+graphicsmagick+java+qt4gui+sound
(active)
octave-control @3.0.0_0+gcc5 (active)
> sudo port install octave-optiminterp
---> Computing dependencies for octave-optiminterp
---> Configuring octave-optiminterp
Error: reinplace: couldn't read file
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
.org_release_tarballs_ports_math_octave-optiminterp/octave-
optiminterp/work/optiminterp/DESCRIPTION": no such file or directory
Error: org.macports.configure for port octave-optiminterp returned:
reinplace sed(1) failed
}}}
Here is the tail of the log file:
{{{
...
:notice:configure ---> Configuring octave-optiminterp
:debug:configure Using compiler 'Xcode Clang'
:debug:configure Executing proc-pre-org.macports.configure-configure-0
:info:configure ---> Patching DESCRIPTION: /Autoload/s at yes@no at g
:debug:configure Executing reinplace: /usr/bin/sed /Autoload/s at yes@no at g <
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
.org_release_tarballs_ports_math_octave-optiminterp/octave-
optiminterp/work/optiminterp/DESCRIPTION >@ file10 2>@stderr
:debug:configure couldn't read file
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
.org_release_tarballs_ports_math_octave-optiminterp/octave-
optiminterp/work/optiminterp/DESCRIPTION": no such file or directory
while executing
"exec /usr/bin/sed /Autoload/s at yes@no at g <
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_..."
("eval" body line 1)
invoked from within
"eval exec $cmdline"
:error:configure reinplace: couldn't read file
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
.org_release_tarballs_ports_math_octave-optiminterp/octave-
optiminterp/work/optiminterp/DESCRIPTION": no such file or directory
:error:configure org.macports.configure for port octave-optiminterp
returned: reinplace sed(1) failed
:debug:configure Error code: NONE
:debug:configure Backtrace: reinplace sed(1) failed
while executing
"proc-pre-org.macports.configure-configure-0 org.macports.configure"
("eval" body line 1)
invoked from within
"eval $pre $targetname"
:info:configure Warning: targets not executed for octave-optiminterp:
org.macports.activate org.macports.configure org.macports.build
org.macports.destroot org.macports.install
:notice:configure Please see the log file for port octave-optiminterp for
details:
/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports
.org_release_tarballs_ports_math_octave-optiminterp/octave-
optiminterp/main.log
}}}
The missing file is in fact not there. There is only an empty directory
named "install" in the otherwise empty directory
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
.org_release_tarballs_ports_math_octave-optiminterp/octave-
optiminterp/work/optiminterp/`
Finally, I tried uninstall and clean followed by port -v install:
{{{
> sudo port -v install octave-optiminterp
---> Computing dependencies for octave-optiminterp.
---> Fetching archive for octave-optiminterp
---> octave-optiminterp-0.3.4_0.darwin_15.x86_64.tbz2 doesn't seem to
exist in /opt/local/var/macports/incoming/verified
---> Attempting to fetch octave-optiminterp-0.3.4_0.darwin_15.x86_64.tbz2
from https://packages.macports.org/octave-optiminterp
% Total % Received % Xferd Average Speed Time Time Time
Current
Dload Upload Total Spent Left
Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:--
0---> Attempting to fetch octave-
optiminterp-0.3.4_0.darwin_15.x86_64.tbz2 from
http://sea.us.packages.macports.org/macports/packages/octave-optiminterp
% Total % Received % Xferd Average Speed Time Time Time
Current
Dload Upload Total Spent Left
Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:--
0---> Attempting to fetch octave-
optiminterp-0.3.4_0.darwin_15.x86_64.tbz2 from
http://mse.uk.packages.macports.org/sites/packages.macports.org/octave-
optiminterp
% Total % Received % Xferd Average Speed Time Time Time
Current
Dload Upload Total Spent Left
Speed
100 308 100 308 0 0 165 0 0:00:01 0:00:01 --:--:--
165
---> Fetching distfiles for octave-optiminterp
---> Verifying checksums for octave-optiminterp
---> Checksumming optiminterp-0.3.4.tar.gz
---> Extracting octave-optiminterp
---> Extracting optiminterp-0.3.4.tar.gz
---> Configuring octave-optiminterp
---> Patching DESCRIPTION: /Autoload/s at yes@no at g
xinstall: mkdir
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
.org_release_tarballs_ports_math_octave-optiminterp/octave-
optiminterp/work/optiminterp
2016-09-15 07:56:57.730 octave-gui[80696:2529640] CFPasteboardRef
CFPasteboardCreate(CFAllocatorRef, CFStringRef) : failed to create global
data
2016-09-15 07:56:57.731 octave-gui[80696:2529640] CFPasteboardRef
CFPasteboardCreate(CFAllocatorRef, CFStringRef) : failed to create global
data
2016-09-15 07:56:57.731 octave-gui[80696:2529640] CFPasteboardRef
CFPasteboardCreate(CFAllocatorRef, CFStringRef) : failed to create global
data
2016-09-15 07:56:57.734 octave-gui[80696:2529640] CFPasteboardRef
CFPasteboardCreate(CFAllocatorRef, CFStringRef) : failed to create global
data
2016-09-15 07:56:57.909 octave-gui[80696:2529686] CFPasteboardRef
CFPasteboardCreate(CFAllocatorRef, CFStringRef) : failed to create global
data
mkdir (/var/tmp/oct-GJ4Jeb)
untar
(/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
.org_release_tarballs_ports_math_octave-optiminterp/octave-
optiminterp/work/.tmp/optiminterp.tar.gz, /var/tmp/oct-GJ4Jeb)
checking for gcc... /usr/bin/clang
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /usr/bin/clang accepts -g... yes
checking for /usr/bin/clang option to accept ISO C89... none needed
checking for mkoctfile... /opt/local/bin/mkoctfile-4.0.3 --verbose
/usr/bin/clang++ -c -I/opt/local/include -fPIC
-I/opt/local/include/octave-4.0.3/octave/..
-I/opt/local/include/octave-4.0.3/octave -I/opt/local/include
-D_THREAD_SAFE -pthread -pipe -Os -arch x86_64 -stdlib=libc++
conftest.cc -o conftest.o
/usr/bin/clang++ -I/opt/local/include/octave-4.0.3/octave/..
-I/opt/local/include/octave-4.0.3/octave -I/opt/local/include
-D_THREAD_SAFE -pthread -pipe -Os -arch x86_64 -stdlib=libc++ -bundle
-bundle_loader /opt/local/bin/octave-4.0.3 -o conftest.oct conftest.o
-L/opt/local/lib/octave/4.0.3 -L/opt/local/lib -loctinterp -loctave
-L/opt/local/lib -Wl,-headerpad_max_install_names -framework JavaVM
clang: warning: argument unused during compilation: '-pthread'
retrieving compile and link flags from /opt/local/bin/mkoctfile-4.0.3
--verbose
checking for F77_FUNC... /usr/bin/clang++ -c -I/opt/local/include -fPIC
-I/opt/local/include/octave-4.0.3/octave/..
-I/opt/local/include/octave-4.0.3/octave -I/opt/local/include
-D_THREAD_SAFE -pthread -pipe -Os -arch x86_64 -stdlib=libc++
conftest.cc -o conftest.o
yes
checking for octave... /opt/local/bin/octave-4.0.3
checking for OCTAVE_VERSION in Octave... 2016-09-15 07:57:02.074 octave-
gui[80913:2530092] CFPasteboardRef CFPasteboardCreate(CFAllocatorRef,
CFStringRef) : failed to create global data
2016-09-15 07:57:02.075 octave-gui[80913:2530092] CFPasteboardRef
CFPasteboardCreate(CFAllocatorRef, CFStringRef) : failed to create global
data
2016-09-15 07:57:02.075 octave-gui[80913:2530092] CFPasteboardRef
CFPasteboardCreate(CFAllocatorRef, CFStringRef) : failed to create global
data
2016-09-15 07:57:02.076 octave-gui[80913:2530092] CFPasteboardRef
CFPasteboardCreate(CFAllocatorRef, CFStringRef) : failed to create global
data
2016-09-15 07:57:02.096 octave-gui[80913:2530106] CFPasteboardRef
CFPasteboardCreate(CFAllocatorRef, CFStringRef) : failed to create global
data
2016-09-15 07:57:02.161 octave-gui[80913:2530092] CFPasteboardRef
CFPasteboardCreate(CFAllocatorRef, CFStringRef) : failed to create global
data
2016-09-15 07:57:02.161 octave-gui[80913:2530092] CFPasteboardRef
CFPasteboardCreate(CFAllocatorRef, CFStringRef) : failed to create global
data
4.0.3
checking for octave_config_info('canonical_host_type') in Octave...
2016-09-15 07:57:02.972 octave-gui[80916:2530117] CFPasteboardRef
CFPasteboardCreate(CFAllocatorRef, CFStringRef) : failed to create global
data
2016-09-15 07:57:02.973 octave-gui[80916:2530117] CFPasteboardRef
CFPasteboardCreate(CFAllocatorRef, CFStringRef) : failed to create global
data
2016-09-15 07:57:02.973 octave-gui[80916:2530117] CFPasteboardRef
CFPasteboardCreate(CFAllocatorRef, CFStringRef) : failed to create global
data
2016-09-15 07:57:02.973 octave-gui[80916:2530117] CFPasteboardRef
CFPasteboardCreate(CFAllocatorRef, CFStringRef) : failed to create global
data
2016-09-15 07:57:02.995 octave-gui[80916:2530129] CFPasteboardRef
CFPasteboardCreate(CFAllocatorRef, CFStringRef) : failed to create global
data
2016-09-15 07:57:03.056 octave-gui[80916:2530117] CFPasteboardRef
CFPasteboardCreate(CFAllocatorRef, CFStringRef) : failed to create global
data
2016-09-15 07:57:03.056 octave-gui[80916:2530117] CFPasteboardRef
CFPasteboardCreate(CFAllocatorRef, CFStringRef) : failed to create global
data
x86_64-apple-darwin15.5.0
checking for octave_config_info('SHLEXT') in Octave... 2016-09-15
07:57:03.860 octave-gui[80919:2530134] CFPasteboardRef
CFPasteboardCreate(CFAllocatorRef, CFStringRef) : failed to create global
data
2016-09-15 07:57:03.861 octave-gui[80919:2530134] CFPasteboardRef
CFPasteboardCreate(CFAllocatorRef, CFStringRef) : failed to create global
data
2016-09-15 07:57:03.861 octave-gui[80919:2530134] CFPasteboardRef
CFPasteboardCreate(CFAllocatorRef, CFStringRef) : failed to create global
data
2016-09-15 07:57:03.861 octave-gui[80919:2530134] CFPasteboardRef
CFPasteboardCreate(CFAllocatorRef, CFStringRef) : failed to create global
data
2016-09-15 07:57:03.886 octave-gui[80919:2530150] CFPasteboardRef
CFPasteboardCreate(CFAllocatorRef, CFStringRef) : failed to create global
data
2016-09-15 07:57:03.945 octave-gui[80919:2530134] CFPasteboardRef
CFPasteboardCreate(CFAllocatorRef, CFStringRef) : failed to create global
data
2016-09-15 07:57:03.945 octave-gui[80919:2530134] CFPasteboardRef
CFPasteboardCreate(CFAllocatorRef, CFStringRef) : failed to create global
data
dylib
checking whether ln -s works... yes
checking for ranlib... /usr/bin/ranlib
checking for strip... strip
checking for mkoctfile... mkoctfile
checking whether we are using the GNU Fortran compiler... yes
checking whether mkoctfile accepts -g... yes
checking for Fortran flag to compile .F90 files... none
checking whether mkoctfile accepts Fortran 90... yes
configure: creating ./config.status
config.status: creating Makeconf
"$prefix" is
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
.org_release_tarballs_ports_math_octave-optiminterp/octave-
optiminterp/work/optiminterp/install/optiminterp-0.3.4
"$exec_prefix" is ${prefix}
octave commands will install into the following directories:
m-files: /opt/local/share/octave/4.0.3/site/m/octave-forge
oct-files: /opt/local/lib/octave/4.0.3/site/oct/x86_64-apple-
darwin15.5.0/octave-forge
binaries: /opt/local/libexec/octave/4.0.3/site/exec/x86_64-apple-
darwin15.5.0
alternatives:
m-files: /opt/local/share/octave/4.0.3/site/octave-forge-
alternatives/m
oct-files: /opt/local/lib/octave/4.0.3/site/octave-forge-
alternatives/oct/x86_64-apple-darwin15.5.0
shell commands will install into the following directories:
binaries: ${exec_prefix}/bin
man pages: ${datarootdir}/man
libraries: ${exec_prefix}/lib
headers: ${prefix}/include
octave-forge is configured with
octave: /opt/local/bin/octave-4.0.3 (version 4.0.3)
mkoctfile: /opt/local/bin/mkoctfile-4.0.3 --verbose for Octave 3
optiminterp toolbox: yes
find . -name NOINSTALL -print # shows which toolboxes won't be
installed
/opt/local/bin/mkoctfile-4.0.3 --verbose -DHAVE_OCTAVE_ -v -c
optiminterp.cc
FFLAGS="-Os" /opt/local/bin/mkoctfile-4.0.3 --verbose -DHAVE_OCTAVE_ -v -c
optimal_interpolation.F90
FFLAGS="-Os" /opt/local/bin/mkoctfile-4.0.3 --verbose -DHAVE_OCTAVE_ -v -c
optiminterp_wrapper.F90
/usr/bin/clang++ -c -I/opt/local/include -fPIC
-I/opt/local/include/octave-4.0.3/octave/..
-I/opt/local/include/octave-4.0.3/octave -I/opt/local/include
-D_THREAD_SAFE -pthread -pipe -Os -arch x86_64 -stdlib=libc++
-DHAVE_OCTAVE_ optiminterp.cc -o optiminterp.o
/opt/local/bin/gfortran-mp-5 -c -fPIC -Os -DHAVE_OCTAVE_
optiminterp_wrapper.F90 -o optiminterp_wrapper.o
/opt/local/bin/gfortran-mp-5 -c -fPIC -Os -DHAVE_OCTAVE_
optimal_interpolation.F90 -o optimal_interpolation.o
optiminterp_wrapper.F90:20:5:
use optimal_interpolation
1
Fatal Error: Can't open module file 'optimal_interpolation.mod' for
reading at (1): No such file or directory
compilation terminated.
make: *** [optiminterp_wrapper.o] Error 1
make: *** Waiting for unfinished jobs....
pkg: error running `make' for the optiminterp package.
error: called from 'configure_make' in file
/opt/local/share/octave/4.0.3/m/pkg/private/configure_make.m near line 96,
column 9
2016-09-15 07:57:07.186 octave-gui[80696:2529640] CFPasteboardRef
CFPasteboardCreate(CFAllocatorRef, CFStringRef) : failed to create global
data
2016-09-15 07:57:07.186 octave-gui[80696:2529640] CFPasteboardRef
CFPasteboardCreate(CFAllocatorRef, CFStringRef) : failed to create global
data
Command failed: cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
.org_release_tarballs_ports_math_octave-optiminterp/octave-
optiminterp/work/optiminterp" && /opt/local/bin/octave -q -f --eval 'pkg
build -verbose -nodeps
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
.org_release_tarballs_ports_math_octave-optiminterp/octave-
optiminterp/work/optiminterp
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
.org_release_tarballs_ports_math_octave-optiminterp/octave-
optiminterp/work/.tmp/optiminterp.tar.gz'
Exit code: 1
Error: org.macports.configure for port octave-optiminterp returned:
configure failure: command execution failed
Warning: targets not executed for octave-optiminterp:
org.macports.activate org.macports.configure org.macports.build
org.macports.destroot org.macports.install
Please see the log file for port octave-optiminterp for details:
/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports
.org_release_tarballs_ports_math_octave-optiminterp/octave-
optiminterp/main.log
To report a bug, follow the instructions in the guide:
http://guide.macports.org/#project.tickets
Error: Processing of port octave-optiminterp failed
}}}
--
Ticket URL: <https://trac.macports.org/ticket/52255>
MacPorts <https://www.macports.org/>
Ports system for macOS
More information about the macports-tickets
mailing list