[MacPorts] #54467: gmt5 @5.4.2 : hdf5 searching error in configure phase

Wed Jul 12 11:09:18 UTC 2017

#54467: gmt5 @5.4.2 : hdf5 searching error in configure phase
---------------------+-------------------
 Reporter:  kuni255  |      Owner:
     Type:  defect   |     Status:  new
 Priority:  Normal   |  Milestone:
Component:  ports    |    Version:  2.4.1
 Keywords:           |       Port:  gmt5
---------------------+-------------------
 I got following error message during configuring gmt5. I'm using following
 revision of ports on GitHub.

 '''Ports revision on GitHub'''
 {{{
 commit 3f4ab80935efa049afbd37d0f5da6f0bc0aa0d1e
 Author: Jackson Isaac <ijackson at macports.org>
 Date:   Wed Jul 12 11:58:11 2017 +0530

     net/youtube-dl: Update to 2017.07.09
 }}}
 '''Configure error log'''
 {{{
   1 DEBUG: configure phase started at Sun Jul  9 02:11:33 JST 2017
   2 --->  Configuring gmt5
   3 DEBUG: Preferred compilers: clang macports-clang-3.9 macports-
 clang-3.8 macports-clang-3.7
   4 DEBUG: Using compiler 'Xcode Clang'
   5 DEBUG: Executing proc-pre-org.macports.configure-configure-0
   6 DEBUG: Executing proc-pre-org.macports.configure-configure-1
   7 DEBUG: Executing proc-pre-org.macports.configure-configure-2
   8 DEBUG: Executing org.macports.configure (gmt5)
   9 DEBUG: Environment:
  10 DEBUG: CC='/usr/bin/clang'
  11 DEBUG: CC_PRINT_OPTIONS='YES'
  12 DEBUG:
 CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_github
 .com_macports_macports-ports_science_gmt5/gmt5/work/.CC_PRINT_OPTIO    NS'
  13 DEBUG: CFLAGS='-pipe -fstrict-aliasing'
  14 DEBUG: CPATH='/opt/local/include'
  15 DEBUG: CPPFLAGS='-I/opt/local/include'
  16 DEBUG: CXX='/usr/bin/clang++'
  17 DEBUG: CXXFLAGS='-pipe -stdlib=libc++'
  18 DEBUG: F77FLAGS='-m64'
  19 DEBUG: F90FLAGS='-pipe -m64'
  20 DEBUG: FCFLAGS='-pipe -m64'
  21 DEBUG: FFLAGS='-pipe'
  22 DEBUG: INSTALL='/usr/bin/install -c'
  23 DEBUG: LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names'
  24 DEBUG: LIBRARY_PATH='/opt/local/lib'
  25 DEBUG: MACOSX_DEPLOYMENT_TARGET='10.12'
  26 DEBUG: OBJC='/usr/bin/clang'
  27 DEBUG: OBJCFLAGS='-pipe'
  28 DEBUG: OBJCXX='/usr/bin/clang++'
  29 DEBUG: OBJCXXFLAGS='-pipe -stdlib=libc++'
  30 Executing:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_github
 .com_macports_macports-ports_science_gmt5/gmt5/work/build" &&
 /opt/local/bin/cmak    e -DCMAKE_INSTALL_PREFIX='/opt/local'
 -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC"
 -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND
 _FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib
 -DCMAKE_INSTALL_RPATH=/opt/local/lib
 -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX
 _PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev
 -DCMAKE_BUILD_TYPE=RelWithDebInfo -DDCW_ROOT=/opt/local/share/gmt/dcw
 -DGSHHG_ROOT=/opt/local/share/gmt/    gshhg -DNETCDF_ROOT=/opt/local
 -DFFTW3_ROOT=off -DGMT_OPENMP=off -DGMT_INSTALL_MODULE_LINKS=off
 -DGMT_INSTALL_TRADITIONAL_FOLDERNAMES=off -DGDAL_ROOT=/opt/local -DPC
 RE_ROOT=/opt/local -DLICENSE_RESTRICTED=no
 -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12"
 -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/b
 uild/_opt_local_var_macports_sources_github.com_macports_macports-
 ports_science_gmt5/gmt5/work/gmt-5.4.2
  31 DEBUG: system:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_github
 .com_macports_macports-ports_science_gmt5/gmt5/work/build" &&
 /opt/local/bin/    cmake -DCMAKE_INSTALL_PREFIX='/opt/local'
 -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC"
 -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_
 FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib
 -DCMAKE_INSTALL_RPATH=/opt/local/lib
 -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PR
 EFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev
 -DCMAKE_BUILD_TYPE=RelWithDebInfo -DDCW_ROOT=/opt/local/share/gmt/dcw
 -DGSHHG_ROOT=/opt/local/share/    gmt/gshhg -DNETCDF_ROOT=/opt/local
 -DFFTW3_ROOT=off -DGMT_OPENMP=off -DGMT_INSTALL_MODULE_LINKS=off
 -DGMT_INSTALL_TRADITIONAL_FOLDERNAMES=off -DGDAL_ROOT=/opt/local
 -DPCRE_ROOT=/opt/local -DLICENSE_RESTRICTED=no
 -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12"
 -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macpor
 ts/build/_opt_local_var_macports_sources_github.com_macports_macports-
 ports_science_gmt5/gmt5/work/gmt-5.4.2
  32 -- The C compiler identification is AppleClang 8.1.0.8020042
  33 -- Check for working C compiler: /usr/bin/clang
  34 -- Check for working C compiler: /usr/bin/clang -- works
  35 -- Detecting C compiler ABI info
  36 -- Detecting C compiler ABI info - done
  37 -- Detecting C compile features
  38 -- Detecting C compile features - done
  39 -- Found UnixCommands: /bin/bash
  40 -- Searching dependent libraries. This may take a few minutes...
  41 -- Looking for nc_def_var_deflate
  42 CMake Error: The following variables are used in this project, but
 they are set to NOTFOUND.
  43 Please set them or make sure they are set and tested correctly in the
 CMake files:
  44 _found_lib_hdf5
  45     linked by target "cmTC_d165e" in directory
 /opt/local/var/macports/build/_opt_local_var_macports_sources_github
 .com_macports_macports-ports_science_gmt5/gmt5/wor
 k/build/CMakeFiles/CMakeTmp
  46 _found_lib_hdf5_hl
 }}}

--
Ticket URL: <https://trac.macports.org/ticket/54467>
MacPorts <https://www.macports.org/>
Ports system for macOS