[MacPorts] #53774: Coreutils and undefined reference to "_renameat" on x86_64 machine

MacPorts noreply at macports.org
Sat Mar 11 13:50:33 UTC 2017


#53774: Coreutils and undefined reference to "_renameat" on x86_64 machine
------------------------------+------------------------------
 Reporter:  noloader          |      Owner:
     Type:  defect            |     Status:  new
 Priority:  Normal            |  Milestone:
Component:  ports             |    Version:  2.4.1
 Keywords:  coreutils x86_64  |       Port:  coreutils-8.27_0
------------------------------+------------------------------
 I'm attempting to update Macports 2.4.1 on an Intel Core2 x86_64 machine.
 The build fails with:

 {{{
 :info:build src/force-link.c:111:13: warning: implicit declaration of
 function 'renameat' is invalid in C99 [-Wimplicit-function-declaration]
 :info:build       err = renameat (dstdir, dsttmp, dstdir, dstname) == 0 ?
 0 : errno;
 :info:build             ^
 :info:build 1 warning generated.
 ...
 :info:build /usr/bin/clang   -pipe -Os -arch x86_64  -L/opt/local/lib
 -Wl,-headerpad_max_install_names -arch x86_64 -o src/cp src/cp.o
 src/copy.o src/cp-hash.o src/extent-scan.o src/force-link.o src/selinux.o
 src/libver.a lib/libcoreutils.a -lintl -Wl,-framework -Wl,CoreFoundation
 lib/libcoreutils.a
 :info:build Undefined symbols for architecture x86_64:
 :info:build   "_renameat", referenced from:
 :info:build       _force_linkat in force-link.o
 :info:build       _force_symlinkat in force-link.o
 :info:build ld: symbol(s) not found for architecture x86_64
 }}}

 Several of the follwoing have not helped the issue.

 {{{
 $ sudo find /opt/local -name '*coreutils*' -exec rm -rf {} \;
 }}}
 ----

 {{{
 $ port version
 Version: 2.4.1
 }}}
 {{{
 $ port info --maintainer coreutils
 maintainer:
 }}}

 ----


 {{{
 $ cat
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_sysutils_coreutils/coreutils/main.log
 version:1
 :msg:main --->  Computing dependencies for coreutils:info:main
 .:debug:main Checking for conflicts against coreutils
 :debug:main Searching for dependency: gexpr
 :debug:main Didn't find receipt, going to depspec regex for: gexpr
 :debug:main Searching for dependency: xz
 :debug:main Found Dependency: receipt exists for xz
 :debug:main Searching for dependency: gettext
 :debug:main Found Dependency: receipt exists for gettext
 :debug:main Searching for dependency: gmp
 :debug:main Found Dependency: receipt exists for gmp
 :debug:main Searching for dependency: libiconv
 :debug:main Found Dependency: receipt exists for libiconv
 :debug:main Executing org.macports.main (coreutils)
 :debug:main dropping privileges: euid changed to 502, egid changed to 501.
 :debug:archivefetch archivefetch phase started at Fri Mar 10 09:02:44 EST
 2017
 :msg:archivefetch --->  Fetching archive for coreutils
 :debug:archivefetch Executing org.macports.archivefetch (coreutils)
 :debug:archivefetch euid/egid changed to: 0/0
 :debug:archivefetch chowned /opt/local/var/macports/incoming to macports
 :debug:archivefetch euid/egid changed to: 502/501
 :info:archivefetch --->  coreutils-8.27_0.darwin_13.x86_64.tbz2 doesn't
 seem to exist in /opt/local/var/macports/incoming/verified
 :msg:archivefetch --->  Attempting to fetch
 coreutils-8.27_0.darwin_13.x86_64.tbz2 from
 https://packages.macports.org/coreutils
 :debug:archivefetch Fetching archive failed: The requested URL returned
 error: 404 Not Found
 :msg:archivefetch --->  Attempting to fetch
 coreutils-8.27_0.darwin_13.x86_64.tbz2 from
 http://sea.us.packages.macports.org/macports/packages/coreutils
 :debug:archivefetch Fetching archive failed: The requested URL returned
 error: 404 Not Found
 :msg:archivefetch --->  Attempting to fetch
 coreutils-8.27_0.darwin_13.x86_64.tbz2 from
 http://lil.fr.packages.macports.org/coreutils
 :debug:archivefetch Fetching archive failed: The requested URL returned
 error: 404 Not Found
 :debug:archivefetch Privilege de-escalation not attempted as not running
 as root.
 :debug:fetch fetch phase started at Fri Mar 10 09:02:46 EST 2017
 :notice:fetch --->  Fetching distfiles for coreutils
 :debug:fetch elevating privileges for fetch: euid changed to 0, egid
 changed to 0.
 :debug:fetch dropping privileges: euid changed to 502, egid changed to
 501.
 :debug:fetch Executing org.macports.fetch (coreutils)
 :info:fetch --->  coreutils-8.27.tar.xz does not exist in
 /opt/local/var/macports/distfiles/coreutils
 :notice:fetch --->  Attempting to fetch coreutils-8.27.tar.xz from
 https://distfiles.macports.org/coreutils
 :debug:fetch Fetching distfile failed: The requested URL returned error:
 404 Not Found
 :notice:fetch --->  Attempting to fetch coreutils-8.27.tar.xz from
 http://mirror.cc.columbia.edu/pub/software/gnu/coreutils
 :debug:fetch Privilege de-escalation not attempted as not running as root.
 :debug:checksum checksum phase started at Fri Mar 10 09:02:48 EST 2017
 :notice:checksum --->  Verifying checksums for coreutils
 :debug:checksum Executing org.macports.checksum (coreutils)
 :info:checksum --->  Checksumming coreutils-8.27.tar.xz
 :debug:checksum Calculated (rmd160) is
 51653577ab896b306af5ee7bb7552cb4c0c342de
 :debug:checksum Correct (rmd160) checksum for coreutils-8.27.tar.xz
 :debug:checksum Calculated (sha256) is
 8891d349ee87b9ff7870f52b6d9312a9db672d2439d289bc57084771ca21656b
 :debug:checksum Correct (sha256) checksum for coreutils-8.27.tar.xz
 :debug:checksum Privilege de-escalation not attempted as not running as
 root.
 :debug:extract extract phase started at Fri Mar 10 09:02:48 EST 2017
 :notice:extract --->  Extracting coreutils
 :debug:extract setting option extract.cmd to /opt/local/bin/xz
 :debug:extract Executing org.macports.extract (coreutils)
 :info:extract --->  Extracting coreutils-8.27.tar.xz
 :debug:extract setting option extract.args to
 '/opt/local/var/macports/distfiles/coreutils/coreutils-8.27.tar.xz'
 :debug:extract Environment:
 :debug:extract CC_PRINT_OPTIONS='YES'
 :debug:extract
 CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_sysutils_coreutils/coreutils/work/.CC_PRINT_OPTIONS'
 :debug:extract CPATH='/opt/local/include'
 :debug:extract LIBRARY_PATH='/opt/local/lib'
 :debug:extract MACOSX_DEPLOYMENT_TARGET='10.9'
 :info:extract Executing:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_sysutils_coreutils/coreutils/work"
 && /opt/local/bin/xz -dc
 '/opt/local/var/macports/distfiles/coreutils/coreutils-8.27.tar.xz' |
 /usr/bin/tar -xf -
 :debug:extract system:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_sysutils_coreutils/coreutils/work"
 && /opt/local/bin/xz -dc
 '/opt/local/var/macports/distfiles/coreutils/coreutils-8.27.tar.xz' |
 /usr/bin/tar -xf -
 :debug:extract euid/egid changed to: 0/0
 :debug:extract chowned
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_sysutils_coreutils/coreutils/work
 to macports
 :debug:extract euid/egid changed to: 502/501
 :debug:extract Privilege de-escalation not attempted as not running as
 root.
 :debug:patch patch phase started at Fri Mar 10 09:02:52 EST 2017
 :debug:patch Executing org.macports.patch (coreutils)
 :debug:patch Privilege de-escalation not attempted as not running as root.
 :debug:configure configure phase started at Fri Mar 10 09:02:52 EST 2017
 :notice:configure --->  Configuring coreutils
 :debug:configure Preferred compilers: clang macports-clang-3.9 macports-
 clang-3.8 macports-clang-3.7 macports-clang-3.4 macports-llvm-gcc-4.2
 apple-gcc-4.2
 :debug:configure Using compiler 'Xcode Clang'
 :debug:configure Executing org.macports.configure (coreutils)
 :debug:configure Environment:
 :debug:configure CC='/usr/bin/clang'
 :debug:configure CC_PRINT_OPTIONS='YES'
 :debug:configure
 CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_sysutils_coreutils/coreutils/work/.CC_PRINT_OPTIONS'
 :debug:configure CFLAGS='-pipe -Os -arch x86_64'
 :debug:configure CPATH='/opt/local/include'
 :debug:configure CPPFLAGS='-I/opt/local/include'
 :debug:configure CXX='/usr/bin/clang++'
 :debug:configure CXXFLAGS='-pipe -Os -stdlib=libc++ -arch x86_64'
 :debug:configure F77FLAGS='-m64'
 :debug:configure F90FLAGS='-pipe -Os -m64'
 :debug:configure FCFLAGS='-pipe -Os -m64'
 :debug:configure FFLAGS='-pipe -Os'
 :debug:configure FORCE_UNSAFE_CONFIGURE='1'
 :debug:configure INSTALL='/usr/bin/install -c'
 :debug:configure LDFLAGS='-L/opt/local/lib
 -Wl,-headerpad_max_install_names -arch x86_64'
 :debug:configure LIBRARY_PATH='/opt/local/lib'
 :debug:configure MACOSX_DEPLOYMENT_TARGET='10.9'
 :debug:configure OBJC='/usr/bin/clang'
 :debug:configure OBJCFLAGS='-pipe -Os -arch x86_64'
 :debug:configure OBJCXX='/usr/bin/clang++'
 :debug:configure OBJCXXFLAGS='-pipe -Os -stdlib=libc++ -arch x86_64'
 :info:configure Executing:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_sysutils_coreutils/coreutils/work/coreutils-8.27"
 && ./configure --prefix=/opt/local --disable-silent-rules --program-
 prefix=g
 :debug:configure system:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_sysutils_coreutils/coreutils/work/coreutils-8.27"
 && ./configure --prefix=/opt/local --disable-silent-rules --program-
 prefix=g
 :info:configure checking for a BSD-compatible install... /usr/bin/install
 -c
 :info:configure checking whether build environment is sane... yes
 :info:configure checking for a thread-safe mkdir -p...
 /opt/local/bin/gmkdir -p
 :info:configure checking for gawk... gawk
 :info:configure checking whether make sets $(MAKE)... yes
 :info:configure checking whether make supports nested variables... yes
 :info:configure checking whether make supports nested variables...
 (cached) yes
 :info:configure checking for style of include used by make... GNU
 :info:configure checking for gcc... /usr/bin/clang
 :info:configure checking whether the C compiler works... yes
 :info:configure checking for C compiler default output file name... a.out
 :info:configure checking for suffix of executables...
 :info:configure checking whether we are cross compiling... no
 :info:configure checking for suffix of object files... o
 :info:configure checking whether we are using the GNU C compiler... yes
 :info:configure checking whether /usr/bin/clang accepts -g... yes
 :info:configure checking for /usr/bin/clang option to accept ISO C89...
 none needed
 :info:configure checking whether /usr/bin/clang understands -c and -o
 together... yes
 :info:configure checking dependency style of /usr/bin/clang... gcc3
 :info:configure checking for /usr/bin/clang option to accept ISO C99...
 none needed
 :info:configure checking for /usr/bin/clang option to accept ISO Standard
 C... (cached) none needed
 :info:configure checking how to run the C preprocessor... /usr/bin/clang
 -E
 :info:configure checking for grep that handles long lines and -e...
 /opt/local/bin/grep
 :info:configure checking for egrep... /opt/local/bin/grep -E
 :info:configure checking whether /usr/bin/clang needs -traditional... no
 :info:configure checking for ranlib... ranlib
 :info:configure checking whether ln -s works... yes
 :info:configure checking for ANSI C header files... yes
 :info:configure checking for sys/types.h... yes
 :info:configure checking for sys/stat.h... yes
 :info:configure checking for stdlib.h... yes
 :info:configure checking for string.h... yes
 :info:configure checking for memory.h... yes
 :info:configure checking for strings.h... yes
 :info:configure checking for inttypes.h... yes
 :info:configure checking for stdint.h... yes
 :info:configure checking for unistd.h... yes
 ...
 a:info:build depbase=`echo src/comm.o | sed
 's|[^/]*$|.deps/&|;s|\.o$||'`;\
 :info:build     /usr/bin/clang  -I. -I./lib  -Ilib -I./lib -Isrc -I./src
 -I/opt/local/include   -pipe -Os -arch x86_64 -MT src/comm.o -MD -MP -MF
 $depbase.Tpo -c -o src/comm.o src/comm.c &&\
 :info:build     mv -f $depbase.Tpo $depbase.Po
 :info:build /usr/bin/clang   -pipe -Os -arch x86_64  -L/opt/local/lib
 -Wl,-headerpad_max_install_names -arch x86_64 -o src/comm src/comm.o
 src/libver.a lib/libcoreutils.a -lintl -Wl,-framework -Wl,CoreFoundation
 lib/libcoreutils.a
 :info:build depbase=`echo src/cp.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
 :info:build     /usr/bin/clang  -I. -I./lib  -Ilib -I./lib -Isrc -I./src
 -I/opt/local/include   -pipe -Os -arch x86_64 -MT src/cp.o -MD -MP -MF
 $depbase.Tpo -c -o src/cp.o src/cp.c &&\
 :info:build     mv -f $depbase.Tpo $depbase.Po
 :info:build depbase=`echo src/copy.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
 :info:build     /usr/bin/clang  -I. -I./lib  -Ilib -I./lib -Isrc -I./src
 -I/opt/local/include   -pipe -Os -arch x86_64 -MT src/copy.o -MD -MP -MF
 $depbase.Tpo -c -o src/copy.o src/copy.c &&\
 :info:build     mv -f $depbase.Tpo $depbase.Po
 :info:build depbase=`echo src/cp-hash.o | sed
 's|[^/]*$|.deps/&|;s|\.o$||'`;\
 :info:build     /usr/bin/clang  -I. -I./lib  -Ilib -I./lib -Isrc -I./src
 -I/opt/local/include   -pipe -Os -arch x86_64 -MT src/cp-hash.o -MD -MP
 -MF $depbase.Tpo -c -o src/cp-hash.o src/cp-hash.c &&\
 :info:build     mv -f $depbase.Tpo $depbase.Po
 :info:build depbase=`echo src/extent-scan.o | sed
 's|[^/]*$|.deps/&|;s|\.o$||'`;\
 :info:build     /usr/bin/clang  -I. -I./lib  -Ilib -I./lib -Isrc -I./src
 -I/opt/local/include   -pipe -Os -arch x86_64 -MT src/extent-scan.o -MD
 -MP -MF $depbase.Tpo -c -o src/extent-scan.o src/extent-scan.c &&\
 :info:build     mv -f $depbase.Tpo $depbase.Po
 :info:build depbase=`echo src/force-link.o | sed
 's|[^/]*$|.deps/&|;s|\.o$||'`;\
 :info:build     /usr/bin/clang  -I. -I./lib  -Ilib -I./lib -Isrc -I./src
 -I/opt/local/include   -pipe -Os -arch x86_64 -MT src/force-link.o -MD -MP
 -MF $depbase.Tpo -c -o src/force-link.o src/force-link.c &&\
 :info:build     mv -f $depbase.Tpo $depbase.Po
 :info:build src/force-link.c:111:13: warning: implicit declaration of
 function 'renameat' is invalid in C99 [-Wimplicit-function-declaration]
 :info:build       err = renameat (dstdir, dsttmp, dstdir, dstname) == 0 ?
 0 : errno;
 :info:build             ^
 :info:build 1 warning generated.
 :info:build depbase=`echo src/selinux.o | sed
 's|[^/]*$|.deps/&|;s|\.o$||'`;\
 :info:build     /usr/bin/clang  -I. -I./lib  -Ilib -I./lib -Isrc -I./src
 -I/opt/local/include   -pipe -Os -arch x86_64 -MT src/selinux.o -MD -MP
 -MF $depbase.Tpo -c -o src/selinux.o src/selinux.c &&\
 :info:build     mv -f $depbase.Tpo $depbase.Po
 :info:build /usr/bin/clang   -pipe -Os -arch x86_64  -L/opt/local/lib
 -Wl,-headerpad_max_install_names -arch x86_64 -o src/cp src/cp.o
 src/copy.o src/cp-hash.o src/extent-scan.o src/force-link.o src/selinux.o
 src/libver.a lib/libcoreutils.a -lintl -Wl,-framework -Wl,CoreFoundation
 lib/libcoreutils.a
 :info:build Undefined symbols for architecture x86_64:
 :info:build   "_renameat", referenced from:
 :info:build       _force_linkat in force-link.o
 :info:build       _force_symlinkat in force-link.o
 :info:build ld: symbol(s) not found for architecture x86_64
 :info:build clang: error: linker command failed with exit code 1 (use -v
 to see invocation)
 :info:build make[2]: *** [src/cp] Error 1
 :info:build make[2]: Leaving directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_sysutils_coreutils/coreutils/work/coreutils-8.27'
 :info:build make[1]: *** [all-recursive] Error 1
 :info:build make[1]: Leaving directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_sysutils_coreutils/coreutils/work/coreutils-8.27'
 :info:build make: *** [all] Error 2
 :info:build make: Leaving directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_sysutils_coreutils/coreutils/work/coreutils-8.27'
 :info:build Command failed:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_sysutils_coreutils/coreutils/work/coreutils-8.27"
 && /usr/bin/make -w all
 :info:build Exit code: 2
 :error:build Failed to build coreutils: command execution failed
 :debug:build Error code: CHILDSTATUS 76168 2
 :debug:build Backtrace: command execution failed
 :debug:build     while executing
 :debug:build "system {*}$notty {*}$nice $fullcmdstring"
 :debug:build     invoked from within
 :debug:build "command_exec build"
 :debug:build     (procedure "portbuild::build_main" line 8)
 :debug:build     invoked from within
 :debug:build "$procedure $targetname"
 }}}

--
Ticket URL: <https://trac.macports.org/ticket/53774>
MacPorts <https://www.macports.org/>
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