[MacPorts] #54119: petsc configure python bug

[MacPorts]

#54119: petsc configure python bug
-----------------------+-------------------
 Reporter:  jjstickel  |      Owner:
     Type:  defect     |     Status:  new
 Priority:  Normal     |  Milestone:
Component:  ports      |    Version:
 Keywords:             |       Port:  petsc
-----------------------+-------------------
 I received a configure error when installing petsc while having python35
 set by "port select". From the log:

 {{{
 :info:configure Executing:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_sea.us.rsync.macports.org_release_tarballs_ports_math_petsc/petsc/work/v3.7.4"
 && ./configure --prefix=/opt/local --prefix=/opt/local/lib/petsc --with-
 valgrind=0 --with-shared-libraries --with-debugging=0 --with-c2html-
 dir=/opt/local --without-x --with-blas-lapack-
 lib=/System/Library/Frameworks/Accelerate.framework/Versions/Current/Accelerate
 --with-hwloc-dir=/opt/local --with-suitesparse-dir=/opt/local --with-
 metis-dir=/opt/local --with-parmetis-dir=/opt/local --with-
 hdf5-dir=/opt/local CC="/opt/local/bin/mpicc-openmpi-mp"
 CXX="/opt/local/bin/mpicxx-openmpi-mp" FC="/opt/local/bin/mpif90-openmpi-
 mp" F77="/opt/local/bin/mpif90-openmpi-mp" F90="/opt/local/bin/mpif90
 -openmpi-mp" COPTFLAGS="-Os" CXXOPTFLAGS="-Os" FOPTFLAGS="-Os"
 LDFLAGS="-L/opt/local/lib -Wl,-headerpad_max_install_names"
 CPPFLAGS="-I/opt/local/include" CFLAGS="-Os -arch x86_64" CXXFLAGS="-Os"
 FFLAGS="-Os" FCFLAGS="-Os" F90FLAGS="-Os" PETSC_ARCH="arch-macports"
 --with-mpiexec=mpiexec-openmpi-mp
 :debug:configure system:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_sea.us.rsync.macports.org_release_tarballs_ports_math_petsc/petsc/work/v3.7.4"
 && ./configure --prefix=/opt/local --prefix=/opt/local/lib/petsc --with-
 valgrind=0 --with-shared-libraries --with-debugging=0 --with-c2html-
 dir=/opt/local --without-x --with-blas-lapack-
 lib=/System/Library/Frameworks/Accelerate.framework/Versions/Current/Accelerate
 --with-hwloc-dir=/opt/local --with-suitesparse-dir=/opt/local --with-
 metis-dir=/opt/local --with-parmetis-dir=/opt/local --with-
 hdf5-dir=/opt/local CC="/opt/local/bin/mpicc-openmpi-mp"
 CXX="/opt/local/bin/mpicxx-openmpi-mp" FC="/opt/local/bin/mpif90-openmpi-
 mp" F77="/opt/local/bin/mpif90-openmpi-mp" F90="/opt/local/bin/mpif90
 -openmpi-mp" COPTFLAGS="-Os" CXXOPTFLAGS="-Os" FOPTFLAGS="-Os"
 LDFLAGS="-L/opt/local/lib -Wl,-headerpad_max_install_names"
 CPPFLAGS="-I/opt/local/include" CFLAGS="-Os -arch x86_64" CXXFLAGS="-Os"
 FFLAGS="-Os" FCFLAGS="-Os" F90FLAGS="-Os" PETSC_ARCH="arch-macports"
 --with-mpiexec=mpiexec-openmpi-mp
 :info:configure Configure does not support Python 3 yet, please run as
 :info:configure   python2 './configure' '--prefix=/opt/local' '--
 prefix=/opt/local/lib/petsc' '--with-valgrind=0' '--with-shared-libraries'
 '--with-debugging=0' '--with-c2html-dir=/opt/local' '--without-x' '--with-
 blas-lapack-
 lib=/System/Library/Frameworks/Accelerate.framework/Versions/Current/Accelerate'
 '--with-hwloc-dir=/opt/local' '--with-suitesparse-dir=/opt/local' '--with-
 metis-dir=/opt/local' '--with-parmetis-dir=/opt/local' '--with-
 hdf5-dir=/opt/local' 'CC=/opt/local/bin/mpicc-openmpi-mp'
 'CXX=/opt/local/bin/mpicxx-openmpi-mp' 'FC=/opt/local/bin/mpif90-openmpi-
 mp' 'F77=/opt/local/bin/mpif90-openmpi-mp' 'F90=/opt/local/bin/mpif90
 -openmpi-mp' 'COPTFLAGS=-Os' 'CXXOPTFLAGS=-Os' 'FOPTFLAGS=-Os'
 'LDFLAGS=-L/opt/local/lib -Wl,-headerpad_max_install_names'
 'CPPFLAGS=-I/opt/local/include' 'CFLAGS=-Os -arch x86_64' 'CXXFLAGS=-Os'
 'FFLAGS=-Os' 'FCFLAGS=-Os' 'F90FLAGS=-Os' 'PETSC_ARCH=arch-macports'
 '--with-mpiexec=mpiexec-openmpi-mp'
 :info:configure Command failed:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_sea.us.rsync.macports.org_release_tarballs_ports_math_petsc/petsc/work/v3.7.4"
 && ./configure --prefix=/opt/local --prefix=/opt/local/lib/petsc --with-
 valgrind=0 --with-shared-libraries --with-debugging=0 --with-c2html-
 dir=/opt/local --without-x --with-blas-lapack-
 lib=/System/Library/Frameworks/Accelerate.framework/Versions/Current/Accelerate
 --with-hwloc-dir=/opt/local --with-suitesparse-dir=/opt/local --with-
 metis-dir=/opt/local --with-parmetis-dir=/opt/local --with-
 hdf5-dir=/opt/local CC="/opt/local/bin/mpicc-openmpi-mp"
 CXX="/opt/local/bin/mpicxx-openmpi-mp" FC="/opt/local/bin/mpif90-openmpi-
 mp" F77="/opt/local/bin/mpif90-openmpi-mp" F90="/opt/local/bin/mpif90
 -openmpi-mp" COPTFLAGS="-Os" CXXOPTFLAGS="-Os" FOPTFLAGS="-Os"
 LDFLAGS="-L/opt/local/lib -Wl,-headerpad_max_install_names"
 CPPFLAGS="-I/opt/local/include" CFLAGS="-Os -arch x86_64" CXXFLAGS="-Os"
 FFLAGS="-Os" FCFLAGS="-Os" F90FLAGS="-Os" PETSC_ARCH="arch-macports"
 --with-mpiexec=mpiexec-openmpi-mp
 }}}

 I was able to install petsc successfully after selecting python27 instead.
 In case it matters, my variant set is:
 {{{
   petsc
 @3.7.4_0+accelerate+gfortran+hdf5+hwloc+openmpi+parmetis+suitesparse
 (active)
 }}}

 I also found that the dependency lbzip2 is missing from the Portfile for
 petsc, again failing at the configure phase. Installing lbzip2 resolved
 this second issue.

--
Ticket URL: <https://trac.macports.org/ticket/54119>
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