[MacPorts] #57045: gdal-2.3.1_0+hdf5+netcdf+postgresql95 fails to build

MacPorts noreply at macports.org
Mon Aug 27 22:51:03 UTC 2018


#57045: gdal-2.3.1_0+hdf5+netcdf+postgresql95 fails to build
------------------------+------------------------
 Reporter:  EJFielding  |      Owner:  (none)
     Type:  defect      |     Status:  new
 Priority:  Normal      |  Milestone:
Component:  ports       |    Version:  2.5.3
 Keywords:              |       Port:  gdal, hdf5
------------------------+------------------------
 I recently updated several ports to be +openmpi, which triggered
 rebuilding of gdal among other ports. The rebuild failed because it is not
 finding the "mpi.h" header reference in the hdf5.h (hdf5 was installed
 with +openmpi). Here is the part of the log file that I assume is relevant
 (full log attached).

 {{{
 ...
 :info:build /bin/sh
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_gis_gdal/gdal/work/gdal-2.3.1/gdal/libtool
 --mode=compile --silent --tag=CXX /usr/bin/clang++ -std=c++14
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_gis_gdal/gdal/work/gdal-2.3.1/gdal/port
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_gis_gdal/gdal/work/gdal-2.3.1/gdal/gcore
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_gis_gdal/gdal/work/gdal-2.3.1/gdal/alg
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_gis_gdal/gdal/work/gdal-2.3.1/gdal/ogr
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_gis_gdal/gdal/work/gdal-2.3.1/gdal/ogr/ogrsf_frmts
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_gis_gdal/gdal/work/gdal-2.3.1/gdal/gnm
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_gis_gdal/gdal/work/gdal-2.3.1/gdal/apps
 -DHAVE_AVX_AT_COMPILE_TIME -DHAVE_SSSE3_AT_COMPILE_TIME
 -DHAVE_SSE_AT_COMPILE_TIME -pipe -DGDAL_COMPILATION -stdlib=libc++ -arch
 x86_64  -Wall -Wextra -Winit-self -Wunused-parameter -Wformat -Werror
 =format-security -Wno-format-nonliteral -Wshorten-64-to-32 -Wshadow
 -Werror=vla -Wdate-time -Wnull-dereference -Wextra-semi -Wcomma -Wfloat-
 conversion -Wdocumentation -Wno-documentation-deprecated-sync -Wunused-
 private-field -Wmissing-prototypes -Wmissing-declarations -Wnon-virtual-
 dtor -Woverloaded-virtual -fno-operator-names -Wimplicit-fallthrough
 -DGNM_ENABLED
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_gis_gdal/gdal/work/gdal-2.3.1/gdal/port
 -DGDAL_COMPILATION -I/opt/local/include  -c -o ../o/gifdataset.lo
 gifdataset.cpp
 :info:build In file included from hdf5dataset.cpp:42:
 :info:build In file included from /opt/local/include/hdf5.h:22:
 :info:build /opt/local/include/H5public.h:60:13: fatal error: 'mpi.h' file
 not found
 :info:build #   include <mpi.h>
 :info:build             ^~~~~~~
 :info:build 1 error generated.
 ...
 }}}

 I have selected one of the openmpi port versions.

 {{{
 >>port select mpi
 Available versions for mpi:
         none
         openmpi-gcc7-fortran
         openmpi-mp-fortran (active)
 }}}

-- 
Ticket URL: <https://trac.macports.org/ticket/57045>
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