[MacPorts] #59895: atlas fails to install with "command execution failed"
MacPorts
noreply at macports.org
Fri Dec 27 22:21:01 UTC 2019
#59895: atlas fails to install with "command execution failed"
--------------------+--------------------
Reporter: nolaaa | Owner: (none)
Type: defect | Status: new
Priority: Normal | Milestone:
Component: ports | Version: 2.6.2
Keywords: | Port:
--------------------+--------------------
I am trying to install an Astronomical package (source-extractor) which
requires atlas to be pre-installed. I am running MacPorts 2.6.2
, Xcode 11.3, and gcc9. However, I keep getting an error that atlas fails
to build. I also tried sudo port clean atlas but still get the same error.
Here is the log of what I am doing:
{{{
sudo port install source-extractor
---> Computing dependencies for source-extractor
The following dependencies will be installed:
atlas
autoconf
automake
fftw-3
fftw-3-single
libtool
Continue? [Y/n]:
---> Fetching archive for atlas
---> Attempting to fetch atlas-3.10.2_2.darwin_19.x86_64.tbz2 from
https://packages.macports.org/atlas
---> Attempting to fetch atlas-3.10.2_2.darwin_19.x86_64.tbz2 from
http://aus.us.packages.macports.org/macports/packages/atlas
---> Attempting to fetch atlas-3.10.2_2.darwin_19.x86_64.tbz2 from
http://kmq.jp.packages.macports.org/atlas
---> Fetching distfiles for atlas
---> Verifying checksums for atlas
---> Extracting atlas
---> Applying patches to atlas
---> Configuring atlas
Selected C compiler: /usr/bin/clang
Selected F77 compiler: gfortran9
Warning: reinplace s|-no-cpp-precomp||g didn't change anything in
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/CONFIG/src/atlcomp.txt
---> Building atlas
Error: Failed to build atlas: command execution failed
Error: See
/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/main.log
for details.
Error: Follow https://guide.macports.org/#project.tickets to report a bug.
Error: Processing of port source-extractor failed
}}}
Also here is the full report of this error in my
/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/main.logfile:
{{{
:debug:build build phase started at Fri Dec 27 13:51:19 PST 2019
:notice:build ---> Building atlas
:debug:build Executing org.macports.build (atlas)
:debug:build port disallows a parallel build
:debug:build Environment:
:debug:build CC='/usr/bin/clang'
:debug:build CC_PRINT_OPTIONS='YES'
:debug:build
CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/.CC_PRINT_OPTIONS'
:debug:build CPATH='/opt/local/include'
:debug:build CXX='/usr/bin/clang++'
:debug:build DEVELOPER_DIR='/Library/Developer/CommandLineTools'
:debug:build LIBRARY_PATH='/opt/local/lib'
:debug:build MACOSX_DEPLOYMENT_TARGET='10.15'
:debug:build
SDKROOT='/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk'
:info:build Executing: cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build"
&& /usr/bin/make -w build
:debug:build system: cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build"
&& /usr/bin/make -w build
:info:build make: Entering directory
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
:info:build /Library/Developer/CommandLineTools/usr/bin/make -f Make.top
build
:info:build make[1]: Entering directory
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
:info:build cd bin/ ; /Library/Developer/CommandLineTools/usr/bin/make
xatlas_build
:info:build make[2]: Entering directory
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
:info:build /usr/bin/clang -DL2SIZE=4194304
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/contrib
-DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX -DATL_ARCH_Corei3
-DATL_CPUMHZ=2900 -DATL_AVXMAC -DATL_SSE3 -DATL_SSE2 -DATL_SSE1
-DATL_USE64BITS -DATL_GAS_x8664 -DATL_DYLIBS -DPentiumCPS=2900
-DATL_FULL_LAPACK -DATL_NCPU=4 -O3 -fomit-frame-pointer -fPIC
-march=native -mfma -c
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_tee.c
:info:build /usr/bin/clang -DL2SIZE=4194304
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/contrib
-DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX -DATL_ARCH_Corei3
-DATL_CPUMHZ=2900 -DATL_AVXMAC -DATL_SSE3 -DATL_SSE2 -DATL_SSE1
-DATL_USE64BITS -DATL_GAS_x8664 -DATL_DYLIBS -DPentiumCPS=2900
-DATL_FULL_LAPACK -DATL_NCPU=4 -O3 -fomit-frame-pointer -fPIC
-march=native -mfma -o xatlas_tee atlas_tee.o
:info:build /usr/bin/clang -DL2SIZE=4194304
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/contrib
-DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX -DATL_ARCH_Corei3
-DATL_CPUMHZ=2900 -DATL_AVXMAC -DATL_SSE3 -DATL_SSE2 -DATL_SSE1
-DATL_USE64BITS -DATL_GAS_x8664 -DATL_DYLIBS -DPentiumCPS=2900
-DATL_FULL_LAPACK -DATL_NCPU=4 -O3 -fomit-frame-pointer -fPIC
-march=native -mfma -c
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c
:info:build In file included from
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:38:
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/atlas_r1parse.h:879:14:
warning: using the result of an assignment as a condition without
parentheses [-Wparentheses]
:info:build while (ln = GetJoinedLines(fpin))
:info:build ~~~^~~~~~~~~~~~~~~~~~~~~~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/atlas_r1parse.h:879:14:
note: place parentheses around the assignment to silence this warning
:info:build while (ln = GetJoinedLines(fpin))
:info:build ^
:info:build ( )
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/atlas_r1parse.h:879:14:
note: use '==' to turn this assignment into an equality comparison
:info:build while (ln = GetJoinedLines(fpin))
:info:build ^
:info:build ==
:info:build In file included from
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:39:
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/atlas_mvparse.h:914:14:
warning: using the result of an assignment as a condition without
parentheses [-Wparentheses]
:info:build while (ln = GetJoinedLines(fpin))
:info:build ~~~^~~~~~~~~~~~~~~~~~~~~~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/atlas_mvparse.h:914:14:
note: place parentheses around the assignment to silence this warning
:info:build while (ln = GetJoinedLines(fpin))
:info:build ^
:info:build ( )
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/atlas_mvparse.h:914:14:
note: use '==' to turn this assignment into an equality comparison
:info:build while (ln = GetJoinedLines(fpin))
:info:build ^
:info:build ==
:info:build In file included from
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:40:
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/atlas_mmparse.h:1011:14:
warning: using the result of an assignment as a condition without
parentheses [-Wparentheses]
:info:build while (ln = GetJoinedLines(fpin))
:info:build ~~~^~~~~~~~~~~~~~~~~~~~~~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/atlas_mmparse.h:1011:14:
note: place parentheses around the assignment to silence this warning
:info:build while (ln = GetJoinedLines(fpin))
:info:build ^
:info:build ( )
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/atlas_mmparse.h:1011:14:
note: use '==' to turn this assignment into an equality comparison
:info:build while (ln = GetJoinedLines(fpin))
:info:build ^
:info:build ==
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:148:22:
warning: using the result of an assignment as a condition without
parentheses [-Wparentheses]
:info:build for (i=0; str0[i] = str[i]; i++);
:info:build ~~~~~~~~^~~~~~~~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:148:22:
note: place parentheses around the assignment to silence this warning
:info:build for (i=0; str0[i] = str[i]; i++);
:info:build ^
:info:build ( )
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:148:22:
note: use '==' to turn this assignment into an equality comparison
:info:build for (i=0; str0[i] = str[i]; i++);
:info:build ^
:info:build ==
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:267:25:
warning: length modifier 'L' results in undefined behavior or no effect
with 'd' conversion specifier [-Wformat]
:info:build sscanf(ln+i, "%Ld", &iret);
:info:build ~^~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:267:25:
note: did you mean to use 'll'?
:info:build sscanf(ln+i, "%Ld", &iret);
:info:build ^
:info:build ll
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:281:30:
warning: format specifies type 'unsigned long *' but the argument has type
'long long *' [-Wformat]
:info:build sscanf(ln+i, "%lx", &iret);
:info:build ~~~ ^~~~~
:info:build %llx
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:486:20:
warning: format string is not a string literal (potentially insecure)
[-Wformat-security]
:info:build fprintf(fp0, ln);
:info:build ^~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:486:20:
note: treat the string as an argument to avoid this
:info:build fprintf(fp0, ln);
:info:build ^
:info:build "%s",
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:488:20:
warning: format string is not a string literal (potentially insecure)
[-Wformat-security]
:info:build fprintf(fp1, ln);
:info:build ^~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:488:20:
note: treat the string as an argument to avoid this
:info:build fprintf(fp1, ln);
:info:build ^
:info:build "%s",
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:684:16:
warning: 'tmpnam' is deprecated: This function is provided for
compatibility reasons only. Due to security concerns inherent in the
design of tmpnam(3), it is highly recommended that you use mkstemp(3)
instead. [-Wdeprecated-declarations]
:info:build ATL_Cassert(tmpnam(tnam), "GETTING TEMPFILE", NULL);
:info:build ^
:info:build
/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/include/stdio.h:186:1:
note: 'tmpnam' has been explicitly marked deprecated here
:info:build __deprecated_msg("This function is provided for compatibility
reasons only. Due to security concerns inherent in the design of
tmpnam(3), it is highly recommended that you use mkstemp(3) instead.")
:info:build ^
:info:build
/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/include/sys/cdefs.h:191:48:
note: expanded from macro '__deprecated_msg'
:info:build #define __deprecated_msg(_msg)
__attribute__((__deprecated__(_msg)))
:info:build ^
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:779:29:
warning: format string is not a string literal (potentially insecure)
[-Wformat-security]
:info:build fprintf(stdout, ln);
:info:build ^~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:779:29:
note: treat the string as an argument to avoid this
:info:build fprintf(stdout, ln);
:info:build ^
:info:build "%s",
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:783:26:
warning: format string is not a string literal (potentially insecure)
[-Wformat-security]
:info:build fprintf(stdout, ln);
:info:build ^~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:783:26:
note: treat the string as an argument to avoid this
:info:build fprintf(stdout, ln);
:info:build ^
:info:build "%s",
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:839:26:
warning: format string is not a string literal (potentially insecure)
[-Wformat-security]
:info:build fprintf(stdout, ln);
:info:build ^~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:839:26:
note: treat the string as an argument to avoid this
:info:build fprintf(stdout, ln);
:info:build ^
:info:build "%s",
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:857:32:
warning: format string is not a string literal (potentially insecure)
[-Wformat-security]
:info:build fprintf(stdout, ln);
:info:build ^~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:857:32:
note: treat the string as an argument to avoid this
:info:build fprintf(stdout, ln);
:info:build ^
:info:build "%s",
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:884:23:
warning: format string is not a string literal (potentially insecure)
[-Wformat-security]
:info:build fprintf(stdout, ln);
:info:build ^~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:884:23:
note: treat the string as an argument to avoid this
:info:build fprintf(stdout, ln);
:info:build ^
:info:build "%s",
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:899:26:
warning: format string is not a string literal (potentially insecure)
[-Wformat-security]
:info:build fprintf(stdout, ln);
:info:build ^~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:899:26:
note: treat the string as an argument to avoid this
:info:build fprintf(stdout, ln);
:info:build ^
:info:build "%s",
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:925:29:
warning: format string is not a string literal (potentially insecure)
[-Wformat-security]
:info:build fprintf(stdout, ln);
:info:build ^~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:925:29:
note: treat the string as an argument to avoid this
:info:build fprintf(stdout, ln);
:info:build ^
:info:build "%s",
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:958:26:
warning: format string is not a string literal (potentially insecure)
[-Wformat-security]
:info:build fprintf(stdout, ln);
:info:build ^~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:958:26:
note: treat the string as an argument to avoid this
:info:build fprintf(stdout, ln);
:info:build ^
:info:build "%s",
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:973:26:
warning: format string is not a string literal (potentially insecure)
[-Wformat-security]
:info:build fprintf(stdout, ln);
:info:build ^~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:973:26:
note: treat the string as an argument to avoid this
:info:build fprintf(stdout, ln);
:info:build ^
:info:build "%s",
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:979:26:
warning: format string is not a string literal (potentially insecure)
[-Wformat-security]
:info:build fprintf(stdout, ln);
:info:build ^~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:979:26:
note: treat the string as an argument to avoid this
:info:build fprintf(stdout, ln);
:info:build ^
:info:build "%s",
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:983:23:
warning: format string is not a string literal (potentially insecure)
[-Wformat-security]
:info:build fprintf(stdout, ln);
:info:build ^~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:983:23:
note: treat the string as an argument to avoid this
:info:build fprintf(stdout, ln);
:info:build ^
:info:build "%s",
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:996:26:
warning: format string is not a string literal (potentially insecure)
[-Wformat-security]
:info:build fprintf(stdout, ln);
:info:build ^~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:996:26:
note: treat the string as an argument to avoid this
:info:build fprintf(stdout, ln);
:info:build ^
:info:build "%s",
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1029:26:
warning: format string is not a string literal (potentially insecure)
[-Wformat-security]
:info:build fprintf(stdout, ln);
:info:build ^~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1029:26:
note: treat the string as an argument to avoid this
:info:build fprintf(stdout, ln);
:info:build ^
:info:build "%s",
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1064:26:
warning: format string is not a string literal (potentially insecure)
[-Wformat-security]
:info:build fprintf(stdout, ln);
:info:build ^~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1064:26:
note: treat the string as an argument to avoid this
:info:build fprintf(stdout, ln);
:info:build ^
:info:build "%s",
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1102:20:
warning: format string is not a string literal (potentially insecure)
[-Wformat-security]
:info:build fprintf(stdout, ln);
:info:build ^~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1102:20:
note: treat the string as an argument to avoid this
:info:build fprintf(stdout, ln);
:info:build ^
:info:build "%s",
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1113:20:
warning: format string is not a string literal (potentially insecure)
[-Wformat-security]
:info:build fprintf(stdout, ln);
:info:build ^~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1113:20:
note: treat the string as an argument to avoid this
:info:build fprintf(stdout, ln);
:info:build ^
:info:build "%s",
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1124:20:
warning: format string is not a string literal (potentially insecure)
[-Wformat-security]
:info:build fprintf(stdout, ln);
:info:build ^~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1124:20:
note: treat the string as an argument to avoid this
:info:build fprintf(stdout, ln);
:info:build ^
:info:build "%s",
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1132:20:
warning: format string is not a string literal (potentially insecure)
[-Wformat-security]
:info:build fprintf(stdout, ln);
:info:build ^~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1132:20:
note: treat the string as an argument to avoid this
:info:build fprintf(stdout, ln);
:info:build ^
:info:build "%s",
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1147:26:
warning: format string is not a string literal (potentially insecure)
[-Wformat-security]
:info:build fprintf(stdout, ln);
:info:build ^~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1147:26:
note: treat the string as an argument to avoid this
:info:build fprintf(stdout, ln);
:info:build ^
:info:build "%s",
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1165:20:
warning: format string is not a string literal (potentially insecure)
[-Wformat-security]
:info:build fprintf(stdout, ln);
:info:build ^~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1165:20:
note: treat the string as an argument to avoid this
:info:build fprintf(stdout, ln);
:info:build ^
:info:build "%s",
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1175:20:
warning: format string is not a string literal (potentially insecure)
[-Wformat-security]
:info:build fprintf(stdout, ln);
:info:build ^~
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1175:20:
note: treat the string as an argument to avoid this
:info:build fprintf(stdout, ln);
:info:build ^
:info:build "%s",
:info:build 30 warnings generated.
:info:build /usr/bin/clang -DL2SIZE=4194304
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/contrib
-DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX -DATL_ARCH_Corei3
-DATL_CPUMHZ=2900 -DATL_AVXMAC -DATL_SSE3 -DATL_SSE2 -DATL_SSE1
-DATL_USE64BITS -DATL_GAS_x8664 -DATL_DYLIBS -DPentiumCPS=2900
-DATL_FULL_LAPACK -DATL_NCPU=4 -O3 -fomit-frame-pointer -fPIC
-march=native -mfma -o xatlas_build atlas_install.o
:info:build make[2]: Leaving directory
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
:info:build cd bin/ ; ./xatlas_build -1 0 -a 1 -l 1
:info:build /bin/sh: line 1: 66976 Segmentation fault: 11 ./xatlas_build
-1 0 -a 1 -l 1
:info:build make[1]: *** [build] Error 139
:info:build make[1]: Leaving directory
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
:info:build make: *** [build] Error 2
:info:build make: Leaving directory
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
:info:build Command failed: cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build"
&& /usr/bin/make -w build
:info:build Exit code: 2
:error:build Failed to build atlas: command execution failed
:debug:build Error code: CHILDSTATUS 66962 2
:debug:build Backtrace: command execution failed
:debug:build while executing
:debug:build "system {*}$notty {*}$nice $fullcmdstring"
:debug:build invoked from within
:debug:build "command_exec build"
:debug:build (procedure "portbuild::build_main" line 8)
:debug:build invoked from within
:debug:build "$procedure $targetname"
:error:build See
/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/main.log
for details.
}}}
--
Ticket URL: <https://trac.macports.org/ticket/59895>
MacPorts <https://www.macports.org/>
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