[MacPorts] #59895: atlas fails to install with "command execution failed"

MacPorts noreply at macports.org
Fri Dec 27 22:21:01 UTC 2019


#59895: atlas fails to install with "command execution failed"
--------------------+--------------------
 Reporter:  nolaaa  |      Owner:  (none)
     Type:  defect  |     Status:  new
 Priority:  Normal  |  Milestone:
Component:  ports   |    Version:  2.6.2
 Keywords:          |       Port:
--------------------+--------------------
 I am trying to install an Astronomical package (source-extractor)  which
 requires atlas to be pre-installed. I am running MacPorts 2.6.2
 , Xcode 11.3, and gcc9. However, I keep getting an error that atlas fails
 to build. I also tried sudo port clean atlas but still get the same error.
 Here is the log of what I am doing:


 {{{
 sudo port install source-extractor
 --->  Computing dependencies for source-extractor
 The following dependencies will be installed:
  atlas
  autoconf
  automake
  fftw-3
  fftw-3-single
  libtool
 Continue? [Y/n]:
 --->  Fetching archive for atlas
 --->  Attempting to fetch atlas-3.10.2_2.darwin_19.x86_64.tbz2 from
 https://packages.macports.org/atlas
 --->  Attempting to fetch atlas-3.10.2_2.darwin_19.x86_64.tbz2 from
 http://aus.us.packages.macports.org/macports/packages/atlas
 --->  Attempting to fetch atlas-3.10.2_2.darwin_19.x86_64.tbz2 from
 http://kmq.jp.packages.macports.org/atlas
 --->  Fetching distfiles for atlas
 --->  Verifying checksums for atlas
 --->  Extracting atlas
 --->  Applying patches to atlas
 --->  Configuring atlas
 Selected C compiler: /usr/bin/clang
 Selected F77 compiler: gfortran9
 Warning: reinplace s|-no-cpp-precomp||g didn't change anything in
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/CONFIG/src/atlcomp.txt
 --->  Building atlas
 Error: Failed to build atlas: command execution failed
 Error: See
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/main.log
 for details.
 Error: Follow https://guide.macports.org/#project.tickets to report a bug.
 Error: Processing of port source-extractor failed
 }}}


 Also here is the full report of this error in my
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/main.logfile:


 {{{
 :debug:build build phase started at Fri Dec 27 13:51:19 PST 2019
 :notice:build --->  Building atlas
 :debug:build Executing org.macports.build (atlas)
 :debug:build port disallows a parallel build
 :debug:build Environment:
 :debug:build CC='/usr/bin/clang'
 :debug:build CC_PRINT_OPTIONS='YES'
 :debug:build
 CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/.CC_PRINT_OPTIONS'
 :debug:build CPATH='/opt/local/include'
 :debug:build CXX='/usr/bin/clang++'
 :debug:build DEVELOPER_DIR='/Library/Developer/CommandLineTools'
 :debug:build LIBRARY_PATH='/opt/local/lib'
 :debug:build MACOSX_DEPLOYMENT_TARGET='10.15'
 :debug:build
 SDKROOT='/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk'
 :info:build Executing:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build"
 && /usr/bin/make -w build
 :debug:build system:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build"
 && /usr/bin/make -w build
 :info:build make: Entering directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
 :info:build /Library/Developer/CommandLineTools/usr/bin/make -f Make.top
 build
 :info:build make[1]: Entering directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
 :info:build cd bin/ ; /Library/Developer/CommandLineTools/usr/bin/make
 xatlas_build
 :info:build make[2]: Entering directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
 :info:build /usr/bin/clang -DL2SIZE=4194304
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/contrib
 -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX -DATL_ARCH_Corei3
 -DATL_CPUMHZ=2900 -DATL_AVXMAC -DATL_SSE3 -DATL_SSE2 -DATL_SSE1
 -DATL_USE64BITS -DATL_GAS_x8664 -DATL_DYLIBS -DPentiumCPS=2900
 -DATL_FULL_LAPACK -DATL_NCPU=4 -O3 -fomit-frame-pointer -fPIC
 -march=native -mfma  -c
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_tee.c
 :info:build /usr/bin/clang -DL2SIZE=4194304
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/contrib
 -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX -DATL_ARCH_Corei3
 -DATL_CPUMHZ=2900 -DATL_AVXMAC -DATL_SSE3 -DATL_SSE2 -DATL_SSE1
 -DATL_USE64BITS -DATL_GAS_x8664 -DATL_DYLIBS -DPentiumCPS=2900
 -DATL_FULL_LAPACK -DATL_NCPU=4 -O3 -fomit-frame-pointer -fPIC
 -march=native -mfma  -o xatlas_tee atlas_tee.o
 :info:build /usr/bin/clang -DL2SIZE=4194304
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/contrib
 -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX -DATL_ARCH_Corei3
 -DATL_CPUMHZ=2900 -DATL_AVXMAC -DATL_SSE3 -DATL_SSE2 -DATL_SSE1
 -DATL_USE64BITS -DATL_GAS_x8664 -DATL_DYLIBS -DPentiumCPS=2900
 -DATL_FULL_LAPACK -DATL_NCPU=4 -O3 -fomit-frame-pointer -fPIC
 -march=native -mfma  -c
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c
 :info:build In file included from
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:38:
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/atlas_r1parse.h:879:14:
 warning: using the result of an assignment as a condition without
 parentheses [-Wparentheses]
 :info:build    while (ln = GetJoinedLines(fpin))
 :info:build           ~~~^~~~~~~~~~~~~~~~~~~~~~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/atlas_r1parse.h:879:14:
 note: place parentheses around the assignment to silence this warning
 :info:build    while (ln = GetJoinedLines(fpin))
 :info:build              ^
 :info:build           (                        )
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/atlas_r1parse.h:879:14:
 note: use '==' to turn this assignment into an equality comparison
 :info:build    while (ln = GetJoinedLines(fpin))
 :info:build              ^
 :info:build              ==
 :info:build In file included from
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:39:
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/atlas_mvparse.h:914:14:
 warning: using the result of an assignment as a condition without
 parentheses [-Wparentheses]
 :info:build    while (ln = GetJoinedLines(fpin))
 :info:build           ~~~^~~~~~~~~~~~~~~~~~~~~~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/atlas_mvparse.h:914:14:
 note: place parentheses around the assignment to silence this warning
 :info:build    while (ln = GetJoinedLines(fpin))
 :info:build              ^
 :info:build           (                        )
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/atlas_mvparse.h:914:14:
 note: use '==' to turn this assignment into an equality comparison
 :info:build    while (ln = GetJoinedLines(fpin))
 :info:build              ^
 :info:build              ==
 :info:build In file included from
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:40:
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/atlas_mmparse.h:1011:14:
 warning: using the result of an assignment as a condition without
 parentheses [-Wparentheses]
 :info:build    while (ln = GetJoinedLines(fpin))
 :info:build           ~~~^~~~~~~~~~~~~~~~~~~~~~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/atlas_mmparse.h:1011:14:
 note: place parentheses around the assignment to silence this warning
 :info:build    while (ln = GetJoinedLines(fpin))
 :info:build              ^
 :info:build           (                        )
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/atlas_mmparse.h:1011:14:
 note: use '==' to turn this assignment into an equality comparison
 :info:build    while (ln = GetJoinedLines(fpin))
 :info:build              ^
 :info:build              ==
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:148:22:
 warning: using the result of an assignment as a condition without
 parentheses [-Wparentheses]
 :info:build    for (i=0; str0[i] = str[i]; i++);
 :info:build              ~~~~~~~~^~~~~~~~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:148:22:
 note: place parentheses around the assignment to silence this warning
 :info:build    for (i=0; str0[i] = str[i]; i++);
 :info:build                      ^
 :info:build              (               )
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:148:22:
 note: use '==' to turn this assignment into an equality comparison
 :info:build    for (i=0; str0[i] = str[i]; i++);
 :info:build                      ^
 :info:build                      ==
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:267:25:
 warning: length modifier 'L' results in undefined behavior or no effect
 with 'd' conversion specifier [-Wformat]
 :info:build          sscanf(ln+i, "%Ld", &iret);
 :info:build                        ~^~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:267:25:
 note: did you mean to use 'll'?
 :info:build          sscanf(ln+i, "%Ld", &iret);
 :info:build                         ^
 :info:build                         ll
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:281:30:
 warning: format specifies type 'unsigned long *' but the argument has type
 'long long *' [-Wformat]
 :info:build          sscanf(ln+i, "%lx", &iret);
 :info:build                        ~~~   ^~~~~
 :info:build                        %llx
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:486:20:
 warning: format string is not a string literal (potentially insecure)
 [-Wformat-security]
 :info:build       fprintf(fp0, ln);
 :info:build                    ^~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:486:20:
 note: treat the string as an argument to avoid this
 :info:build       fprintf(fp0, ln);
 :info:build                    ^
 :info:build                    "%s",
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:488:20:
 warning: format string is not a string literal (potentially insecure)
 [-Wformat-security]
 :info:build       fprintf(fp1, ln);
 :info:build                    ^~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:488:20:
 note: treat the string as an argument to avoid this
 :info:build       fprintf(fp1, ln);
 :info:build                    ^
 :info:build                    "%s",
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:684:16:
 warning: 'tmpnam' is deprecated: This function is provided for
 compatibility reasons only.  Due to security concerns inherent in the
 design of tmpnam(3), it is highly recommended that you use mkstemp(3)
 instead. [-Wdeprecated-declarations]
 :info:build    ATL_Cassert(tmpnam(tnam), "GETTING TEMPFILE", NULL);
 :info:build                ^
 :info:build
 /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/include/stdio.h:186:1:
 note: 'tmpnam' has been explicitly marked deprecated here
 :info:build __deprecated_msg("This function is provided for compatibility
 reasons only.  Due to security concerns inherent in the design of
 tmpnam(3), it is highly recommended that you use mkstemp(3) instead.")
 :info:build ^
 :info:build
 /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/include/sys/cdefs.h:191:48:
 note: expanded from macro '__deprecated_msg'
 :info:build         #define __deprecated_msg(_msg)
 __attribute__((__deprecated__(_msg)))
 :info:build                                                       ^
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:779:29:
 warning: format string is not a string literal (potentially insecure)
 [-Wformat-security]
 :info:build             fprintf(stdout, ln);
 :info:build                             ^~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:779:29:
 note: treat the string as an argument to avoid this
 :info:build             fprintf(stdout, ln);
 :info:build                             ^
 :info:build                             "%s",
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:783:26:
 warning: format string is not a string literal (potentially insecure)
 [-Wformat-security]
 :info:build          fprintf(stdout, ln);
 :info:build                          ^~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:783:26:
 note: treat the string as an argument to avoid this
 :info:build          fprintf(stdout, ln);
 :info:build                          ^
 :info:build                          "%s",
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:839:26:
 warning: format string is not a string literal (potentially insecure)
 [-Wformat-security]
 :info:build          fprintf(stdout, ln);
 :info:build                          ^~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:839:26:
 note: treat the string as an argument to avoid this
 :info:build          fprintf(stdout, ln);
 :info:build                          ^
 :info:build                          "%s",
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:857:32:
 warning: format string is not a string literal (potentially insecure)
 [-Wformat-security]
 :info:build                fprintf(stdout, ln);
 :info:build                                ^~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:857:32:
 note: treat the string as an argument to avoid this
 :info:build                fprintf(stdout, ln);
 :info:build                                ^
 :info:build                                "%s",
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:884:23:
 warning: format string is not a string literal (potentially insecure)
 [-Wformat-security]
 :info:build       fprintf(stdout, ln);
 :info:build                       ^~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:884:23:
 note: treat the string as an argument to avoid this
 :info:build       fprintf(stdout, ln);
 :info:build                       ^
 :info:build                       "%s",
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:899:26:
 warning: format string is not a string literal (potentially insecure)
 [-Wformat-security]
 :info:build          fprintf(stdout, ln);
 :info:build                          ^~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:899:26:
 note: treat the string as an argument to avoid this
 :info:build          fprintf(stdout, ln);
 :info:build                          ^
 :info:build                          "%s",
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:925:29:
 warning: format string is not a string literal (potentially insecure)
 [-Wformat-security]
 :info:build             fprintf(stdout, ln);
 :info:build                             ^~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:925:29:
 note: treat the string as an argument to avoid this
 :info:build             fprintf(stdout, ln);
 :info:build                             ^
 :info:build                             "%s",
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:958:26:
 warning: format string is not a string literal (potentially insecure)
 [-Wformat-security]
 :info:build          fprintf(stdout, ln);
 :info:build                          ^~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:958:26:
 note: treat the string as an argument to avoid this
 :info:build          fprintf(stdout, ln);
 :info:build                          ^
 :info:build                          "%s",
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:973:26:
 warning: format string is not a string literal (potentially insecure)
 [-Wformat-security]
 :info:build          fprintf(stdout, ln);
 :info:build                          ^~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:973:26:
 note: treat the string as an argument to avoid this
 :info:build          fprintf(stdout, ln);
 :info:build                          ^
 :info:build                          "%s",
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:979:26:
 warning: format string is not a string literal (potentially insecure)
 [-Wformat-security]
 :info:build          fprintf(stdout, ln);
 :info:build                          ^~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:979:26:
 note: treat the string as an argument to avoid this
 :info:build          fprintf(stdout, ln);
 :info:build                          ^
 :info:build                          "%s",
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:983:23:
 warning: format string is not a string literal (potentially insecure)
 [-Wformat-security]
 :info:build       fprintf(stdout, ln);
 :info:build                       ^~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:983:23:
 note: treat the string as an argument to avoid this
 :info:build       fprintf(stdout, ln);
 :info:build                       ^
 :info:build                       "%s",
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:996:26:
 warning: format string is not a string literal (potentially insecure)
 [-Wformat-security]
 :info:build          fprintf(stdout, ln);
 :info:build                          ^~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:996:26:
 note: treat the string as an argument to avoid this
 :info:build          fprintf(stdout, ln);
 :info:build                          ^
 :info:build                          "%s",
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1029:26:
 warning: format string is not a string literal (potentially insecure)
 [-Wformat-security]
 :info:build          fprintf(stdout, ln);
 :info:build                          ^~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1029:26:
 note: treat the string as an argument to avoid this
 :info:build          fprintf(stdout, ln);
 :info:build                          ^
 :info:build                          "%s",
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1064:26:
 warning: format string is not a string literal (potentially insecure)
 [-Wformat-security]
 :info:build          fprintf(stdout, ln);
 :info:build                          ^~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1064:26:
 note: treat the string as an argument to avoid this
 :info:build          fprintf(stdout, ln);
 :info:build                          ^
 :info:build                          "%s",
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1102:20:
 warning: format string is not a string literal (potentially insecure)
 [-Wformat-security]
 :info:build    fprintf(stdout, ln);
 :info:build                    ^~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1102:20:
 note: treat the string as an argument to avoid this
 :info:build    fprintf(stdout, ln);
 :info:build                    ^
 :info:build                    "%s",
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1113:20:
 warning: format string is not a string literal (potentially insecure)
 [-Wformat-security]
 :info:build    fprintf(stdout, ln);
 :info:build                    ^~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1113:20:
 note: treat the string as an argument to avoid this
 :info:build    fprintf(stdout, ln);
 :info:build                    ^
 :info:build                    "%s",
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1124:20:
 warning: format string is not a string literal (potentially insecure)
 [-Wformat-security]
 :info:build    fprintf(stdout, ln);
 :info:build                    ^~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1124:20:
 note: treat the string as an argument to avoid this
 :info:build    fprintf(stdout, ln);
 :info:build                    ^
 :info:build                    "%s",
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1132:20:
 warning: format string is not a string literal (potentially insecure)
 [-Wformat-security]
 :info:build    fprintf(stdout, ln);
 :info:build                    ^~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1132:20:
 note: treat the string as an argument to avoid this
 :info:build    fprintf(stdout, ln);
 :info:build                    ^
 :info:build                    "%s",
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1147:26:
 warning: format string is not a string literal (potentially insecure)
 [-Wformat-security]
 :info:build          fprintf(stdout, ln);
 :info:build                          ^~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1147:26:
 note: treat the string as an argument to avoid this
 :info:build          fprintf(stdout, ln);
 :info:build                          ^
 :info:build                          "%s",
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1165:20:
 warning: format string is not a string literal (potentially insecure)
 [-Wformat-security]
 :info:build    fprintf(stdout, ln);
 :info:build                    ^~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1165:20:
 note: treat the string as an argument to avoid this
 :info:build    fprintf(stdout, ln);
 :info:build                    ^
 :info:build                    "%s",
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1175:20:
 warning: format string is not a string literal (potentially insecure)
 [-Wformat-security]
 :info:build    fprintf(stdout, ln);
 :info:build                    ^~
 :info:build
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1175:20:
 note: treat the string as an argument to avoid this
 :info:build    fprintf(stdout, ln);
 :info:build                    ^
 :info:build                    "%s",
 :info:build 30 warnings generated.
 :info:build /usr/bin/clang -DL2SIZE=4194304
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/contrib
 -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX -DATL_ARCH_Corei3
 -DATL_CPUMHZ=2900 -DATL_AVXMAC -DATL_SSE3 -DATL_SSE2 -DATL_SSE1
 -DATL_USE64BITS -DATL_GAS_x8664 -DATL_DYLIBS -DPentiumCPS=2900
 -DATL_FULL_LAPACK -DATL_NCPU=4 -O3 -fomit-frame-pointer -fPIC
 -march=native -mfma  -o xatlas_build atlas_install.o
 :info:build make[2]: Leaving directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
 :info:build cd bin/ ; ./xatlas_build -1 0 -a 1 -l 1
 :info:build /bin/sh: line 1: 66976 Segmentation fault: 11  ./xatlas_build
 -1 0 -a 1 -l 1
 :info:build make[1]: *** [build] Error 139
 :info:build make[1]: Leaving directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
 :info:build make: *** [build] Error 2
 :info:build make: Leaving directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
 :info:build Command failed:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build"
 && /usr/bin/make -w build
 :info:build Exit code: 2
 :error:build Failed to build atlas: command execution failed
 :debug:build Error code: CHILDSTATUS 66962 2
 :debug:build Backtrace: command execution failed
 :debug:build     while executing
 :debug:build "system {*}$notty {*}$nice $fullcmdstring"
 :debug:build     invoked from within
 :debug:build "command_exec build"
 :debug:build     (procedure "portbuild::build_main" line 8)
 :debug:build     invoked from within
 :debug:build "$procedure $targetname"
 :error:build See
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/main.log
 for details.

 }}}

-- 
Ticket URL: <https://trac.macports.org/ticket/59895>
MacPorts <https://www.macports.org/>
Ports system for macOS


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