[MacPorts] #58008: py36-h5py @2.9.0_0+mpich: h5py is running against HDF5 1.10.4 when it was built against 1.8.4

MacPorts noreply at macports.org
Sat Feb 2 19:52:40 UTC 2019


#58008: py36-h5py @2.9.0_0+mpich: h5py is running against HDF5 1.10.4 when it was
built against 1.8.4
------------------------+-----------------------
 Reporter:  BestPotato  |      Owner:  (none)
     Type:  defect      |     Status:  new
 Priority:  Normal      |  Milestone:
Component:  ports       |    Version:  2.5.4
 Keywords:              |       Port:  py36-h5py
------------------------+-----------------------
 installed HDF5 and then installed py36-h5py, both through macports. When
 importing h5py into python3, I get the following warning:

 {{{
 /Users/<user>/.macports/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6
 /site-packages/h5py/__init__.py:75: UserWarning: h5py is running against
 HDF5 1.10.4 when it was built against 1.8.4, this may cause problems
   '{0}.{1}.{2}'.format(*version.hdf5_built_version_tuple)
 }}}

 I am running HDF5 @1.10.4_0+hl+mpich, so I don't understand how h5py was
 built against a version I don't have installed. It seems h5py works for
 the most part. Some of the self tests failed, but the code portions I need
 appear to be functioning.

-- 
Ticket URL: <https://trac.macports.org/ticket/58008>
MacPorts <https://www.macports.org/>
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