[MacPorts] #59461: mongodb @4.0.13: duplicate symbols (was: Error: Failed to build mongodb: command execution failed)

[MacPorts]

#59461: mongodb @4.0.13: duplicate symbols
----------------------+------------------------
  Reporter:  dbl001   |      Owner:  ryandesign
      Type:  defect   |     Status:  assigned
  Priority:  Normal   |  Milestone:
 Component:  ports    |    Version:  2.6.2
Resolution:           |   Keywords:
      Port:  mongodb  |
----------------------+------------------------

Old description:

> I'm on OS X 10.11.6
> from main.log:
> {{{
> :info:build duplicate symbol
> __ZN5mongo13error_details11isNamedCodeILi11000EEE in:
> :info:build     build/MP/mongo/s/cluster_cursor_stats.o
>
> }}}
> Environment:
> {{{
> $ clang --version
> clang version 5.0.0 (tags/RELEASE_500/final)
> Target: x86_64-apple-darwin15.6.0
> Thread model: posix
> InstalledDir: /Users/davidlaxer/anaconda/bin
> $ gcc --version
> Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr
> --with-gxx-include-dir=/usr/include/c++/4.2.1
> Apple LLVM version 8.0.0 (clang-800.0.42.1)
> Target: x86_64-apple-darwin15.6.0
> Thread model: posix
> InstalledDir:
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin
> $ sudo port upgrade outdated
> --->  Computing dependencies for clang-9.0
> --->  Fetching archive for clang-9.0
> --->  Attempting to fetch
> clang-9.0-9.0.0_0+analyzer+libstdcxx.darwin_15.x86_64.tbz2 from
> https://packages.macports.org/clang-9.0
> --->  Attempting to fetch
> clang-9.0-9.0.0_0+analyzer+libstdcxx.darwin_15.x86_64.tbz2.rmd160 from
> https://packages.macports.org/clang-9.0
> --->  Installing clang-9.0 @9.0.0_0+analyzer+libstdcxx
> --->  Activating clang-9.0 @9.0.0_0+analyzer+libstdcxx
> --->  Cleaning clang-9.0
> --->  Computing dependencies for mongodb
> --->  Fetching archive for mongodb
> --->  Attempting to fetch mongodb-4.0.13_0.darwin_15.x86_64.tbz2 from
> https://packages.macports.org/mongodb
> --->  Attempting to fetch mongodb-4.0.13_0.darwin_15.x86_64.tbz2 from
> http://aus.us.packages.macports.org/macports/packages/mongodb
> --->  Attempting to fetch mongodb-4.0.13_0.darwin_15.x86_64.tbz2 from
> http://ywg.ca.packages.macports.org/mirror/macports/packages/mongodb
> --->  Fetching distfiles for mongodb
> --->  Attempting to fetch mongodb-src-r4.0.13.tar.gz from
> https://fastdl.mongodb.org/src
> --->  Verifying checksums for mongodb
> --->  Extracting mongodb
> --->  Applying patches to mongodb
> --->  Configuring mongodb
> --->  Building mongodb
> Error: Failed to build mongodb: command execution failed
> Error: See
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_databases_mongodb/mongodb/main.log
> for details.
> Error: Follow https://guide.macports.org/#project.tickets to report a
> bug.
>
> }}}

New description:

 I'm on OS X 10.11.6\\
 from main.log:
 {{{
 :info:build duplicate symbol
 __ZN5mongo13error_details11isNamedCodeILi11000EEE in:
 :info:build     build/MP/mongo/s/cluster_cursor_stats.o

 }}}
 Environment:
 {{{
 $ clang --version
 clang version 5.0.0 (tags/RELEASE_500/final)
 Target: x86_64-apple-darwin15.6.0
 Thread model: posix
 InstalledDir: /Users/davidlaxer/anaconda/bin
 $ gcc --version
 Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr
 --with-gxx-include-dir=/usr/include/c++/4.2.1
 Apple LLVM version 8.0.0 (clang-800.0.42.1)
 Target: x86_64-apple-darwin15.6.0
 Thread model: posix
 InstalledDir:
 /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin
 $ sudo port upgrade outdated
 --->  Computing dependencies for clang-9.0
 --->  Fetching archive for clang-9.0
 --->  Attempting to fetch
 clang-9.0-9.0.0_0+analyzer+libstdcxx.darwin_15.x86_64.tbz2 from
 https://packages.macports.org/clang-9.0
 --->  Attempting to fetch
 clang-9.0-9.0.0_0+analyzer+libstdcxx.darwin_15.x86_64.tbz2.rmd160 from
 https://packages.macports.org/clang-9.0
 --->  Installing clang-9.0 @9.0.0_0+analyzer+libstdcxx
 --->  Activating clang-9.0 @9.0.0_0+analyzer+libstdcxx
 --->  Cleaning clang-9.0
 --->  Computing dependencies for mongodb
 --->  Fetching archive for mongodb
 --->  Attempting to fetch mongodb-4.0.13_0.darwin_15.x86_64.tbz2 from
 https://packages.macports.org/mongodb
 --->  Attempting to fetch mongodb-4.0.13_0.darwin_15.x86_64.tbz2 from
 http://aus.us.packages.macports.org/macports/packages/mongodb
 --->  Attempting to fetch mongodb-4.0.13_0.darwin_15.x86_64.tbz2 from
 http://ywg.ca.packages.macports.org/mirror/macports/packages/mongodb
 --->  Fetching distfiles for mongodb
 --->  Attempting to fetch mongodb-src-r4.0.13.tar.gz from
 https://fastdl.mongodb.org/src
 --->  Verifying checksums for mongodb
 --->  Extracting mongodb
 --->  Applying patches to mongodb
 --->  Configuring mongodb
 --->  Building mongodb
 Error: Failed to build mongodb: command execution failed
 Error: See
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_databases_mongodb/mongodb/main.log
 for details.
 Error: Follow https://guide.macports.org/#project.tickets to report a bug.

 }}}

--

Comment (by ryandesign):

 Hmm, indeed the log contains mostly the 246,811 duplicate symbol errors.
 I'm not sure what to do about that. I do need to update the port to
 version 4.2.x. I should probably start by doing that and then reevaluate.

-- 
Ticket URL: <https://trac.macports.org/ticket/59461#comment:4>
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