[MacPorts] #60976: Failed to configure R, requires bzip2 version >= 1.0.6, yet bzip2 Version 1.0.8 is installed

MacPorts noreply at macports.org
Sat Aug 8 16:21:49 UTC 2020


#60976: Failed to configure R, requires bzip2 version >= 1.0.6, yet bzip2 Version
1.0.8 is installed
----------------------+--------------------
 Reporter:  raramayo  |      Owner:  (none)
     Type:  defect    |     Status:  new
 Priority:  Normal    |  Milestone:
Component:  ports     |    Version:
 Keywords:            |       Port:
----------------------+--------------------
 Fails to configure R.
 Log file states:

 {{{
 :info:configure checking if zlib version >= 1.2.5... yes
 :info:configure checking whether zlib support suffices... yes
 :info:configure checking mmap support for zlib... yes
 :info:configure checking for BZ2_bzlibVersion in -lbz2... yes
 :info:configure checking bzlib.h usability... yes
 :info:configure checking bzlib.h presence... yes
 :info:configure checking for bzlib.h... yes
 :info:configure checking if bzip2 version >= 1.0.6... no
 :info:configure checking whether bzip2 support suffices... configure:
 error: bzip2 library and headers are required
 :info:configure Command failed:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/work/R-4.0.2"
 && ./configure --prefix=/opt/local/Library/Frameworks --enable-R-framework
 --enable-memory-profiling --enable-R-shlib --enable-BLAS-shlib --without-
 tcltk --with-cairo --disable-java --with-included-gettext --without-blas
 --without-lapack --with-recommended-packages --with-x
 --x-include=/opt/local/include/X11 --x-lib=/opt/local/lib
 :info:configure Exit code: 1
 :error:configure Failed to configure R, consult
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/work/R-4.0.2/config.log
 :error:configure Failed to configure R: configure failure: command
 execution failed
 :debug:configure Error code: NONE
 :debug:configure Backtrace: configure failure: command execution failed
 :debug:configure     while executing
 :debug:configure "$procedure $targetname"
 :error:configure See
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_R/R/main.log
 for details.
 }}}

 I have bzip2 installed

 I tried issuing the `port rev-upgrade` command, which failed, and now when
 I call `R`, I get:
 {{{
 dyld: Library not loaded: /opt/local/lib/libicuuc.65.dylib
   Referenced from:
 /opt/local/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libR.dylib
   Reason: image not found
 Abort trap: 6
 }}}

-- 
Ticket URL: <https://trac.macports.org/ticket/60976>
MacPorts <https://www.macports.org/>
Ports system for macOS


More information about the macports-tickets mailing list