[MacPorts] #59973: broken mpicc-openmpi-gcc9 causes flann +gcc9 +debug +openmpi +python37 build failure

[MacPorts]

#59973: broken mpicc-openmpi-gcc9 causes flann +gcc9 +debug +openmpi +python37
build failure
-----------------------------+--------------------
 Reporter:  TheLastLovemark  |      Owner:  (none)
     Type:  defect           |     Status:  new
 Priority:  Normal           |  Milestone:
Component:  ports            |    Version:  2.6.2
 Keywords:                   |       Port:  flann
-----------------------------+--------------------
 I tried to install flann with: {{{sh-3.2# port -vd install flann +gcc9
 +debug +openmpi +python37}}}

 which gave me this debug error message:
 {{{
 -- The C compiler identification is GNU 9.2.0
 -- The CXX compiler identification is GNU 9.2.0
 -- Checking whether C compiler has -isysroot
 -- Checking whether C compiler has -isysroot - yes
 -- Checking whether C compiler supports OSX deployment target flag
 -- Checking whether C compiler supports OSX deployment target flag - yes
 -- Check for working C compiler: /opt/local/bin/mpicc-openmpi-gcc9
 -- Check for working C compiler: /opt/local/bin/mpicc-openmpi-gcc9 --
 broken
 CMake Error at
 /opt/local/share/cmake-3.16/Modules/CMakeTestCCompiler.cmake:60 (message):
   The C compiler

     "/opt/local/bin/mpicc-openmpi-gcc9"

   is not able to compile a simple test program.

   It fails with the following output:

     Change Dir:
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_flann/flann/work/build/CMakeFiles/CMakeTmp

     Run Build Command(s):/usr/bin/make cmTC_283d7/fast &&
 /Library/Developer/CommandLineTools/usr/bin/make -f
 CMakeFiles/cmTC_283d7.dir/build.make CMakeFiles/cmTC_283d7.dir/build
     Building C object CMakeFiles/cmTC_283d7.dir/testCCompiler.c.o
     /opt/local/bin/mpicc-openmpi-gcc9   -pipe -Os -g -fno-limit-debug-info
 -DDEBUG -I/opt/local/include  -arch x86_64 -mmacosx-version-min=10.13   -o
 CMakeFiles/cmTC_283d7.dir/testCCompiler.c.o   -c
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_flann/flann/work/build/CMakeFiles/CMakeTmp/testCCompiler.c
     gcc-mp-9: error: unrecognized command line option '-fno-limit-debug-
 info'
     make[1]: *** [CMakeFiles/cmTC_283d7.dir/testCCompiler.c.o] Error 1
     make: *** [cmTC_283d7/fast] Error 2





   CMake will not be able to correctly generate this project.
 Call Stack (most recent call first):
   CMakeLists.txt:7 (project)


 -- Configuring incomplete, errors occurred!
 See also
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_flann/flann/work/build/CMakeFiles/CMakeOutput.log".
 See also
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_flann/flann/work/build/CMakeFiles/CMakeError.log".
 Command failed:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_flann/flann/work/build"
 && /opt/local/bin/cmake -G "CodeBlocks - Unix Makefiles"
 -DCMAKE_BUILD_TYPE=MacPorts -DCMAKE_INSTALL_PREFIX="/opt/local"
 -DCMAKE_INSTALL_NAME_DIR="/opt/local/lib"
 -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_C_COMPILER="$CC"
 -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_POLICY_DEFAULT_CMP0025=NEW
 -DCMAKE_POLICY_DEFAULT_CMP0060=NEW -DCMAKE_VERBOSE_MAKEFILE=ON
 -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_FIND_FRAMEWORK=LAST
 -DCMAKE_EXPORT_COMPILE_COMMANDS=ON -DCMAKE_MAKE_PROGRAM=/usr/bin/make
 -DCMAKE_MODULE_PATH="/opt/local/share/cmake/Modules"
 -DCMAKE_PREFIX_PATH="/opt/local/share/cmake/Modules"
 -DCMAKE_BUILD_WITH_INSTALL_RPATH:BOOL=ON
 -DCMAKE_INSTALL_RPATH="/opt/local/lib" -Wno-dev flann-1.9.1
 -DBUILD_MATLAB_BINDINGS=OFF -DBUILD_CUDA_LIB=OFF -DUSE_MPI=ON
 -DCMAKE_STRIP:FILEPATH=/bin/echo
 -DPYTHON_EXECUTABLE=/opt/local/bin/python3.7
 -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.13"
 -DCMAKE_OSX_SYSROOT="/"
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_flann/flann/work/flann-1.9.1
 Exit code: 1
 Error: Failed to configure flann: configure failure: command execution
 failed
 }}}


 Initially I did not have an mpi selection set.

 I changed that with:

 {{{
 sh-3.2# port select --set mpi openmpi-gcc9-fortran
 Selecting 'openmpi-gcc9-fortran' for 'mpi' succeeded. 'openmpi-
 gcc9-fortran' is now active.
 }}}

 which yelded:

 {{{
 $ port select --summary
 Name       Selected              Options
 ====       ========              =======
 clang      mp-clang-9.0          mp-clang-3.7 mp-clang-9.0 none
 cython     cython37              cython27 cython37 cython38 none
 gcc        mp-gcc9               mp-gcc5 mp-gcc6 mp-gcc7 mp-gcc8 mp-gcc9
 none
 ipython    py37-ipython          py37-ipython py38-ipython none
 ipython3   py37-ipython          py37-ipython py38-ipython none
 llvm       mp-llvm-9.0           mp-llvm-3.7 mp-llvm-7.0 mp-llvm-8.0 mp-
 llvm-9.0 none
 mpi        openmpi-gcc9-fortran  mpich-mp-fortran openmpi-clang90-fortran
 openmpi-gcc9-fortran openmpi-mp-fortran none
 nosetests  nosetests37           nosetests27 nosetests37 nosetests38 none
 pip        pip37                 pip27 pip37 pip38 none
 pip2       pip27                 pip27 none
 pip3       pip37                 pip37 pip38 none
 pygments   py37-pygments         py27-pygments py37-pygments py38-pygments
 none
 pytest     pytest37              pytest37 pytest38 none
 python     python37              python27 python27-apple python37 python38
 none
 python2    python27              python27 python27-apple none
 python3    python37              python37 python38 none
 sphinx     py37-sphinx           py27-sphinx py37-sphinx py38-sphinx none
 wxWidgets  none                  wxWidgets-3.0 none
 }}}

 The log file is attached.

 Thanks for all your help!

-- 
Ticket URL: <https://trac.macports.org/ticket/59973>
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