[MacPorts] #59973: broken mpicc-openmpi-gcc9 causes flann +gcc9 +debug +openmpi +python37 build failure
MacPorts
noreply at macports.org
Thu Jan 16 03:03:07 UTC 2020
#59973: broken mpicc-openmpi-gcc9 causes flann +gcc9 +debug +openmpi +python37
build failure
------------------------------+--------------------
Reporter: TheLastLovemark | Owner: (none)
Type: defect | Status: new
Priority: Normal | Milestone:
Component: ports | Version: 2.6.2
Resolution: | Keywords:
Port: flann |
------------------------------+--------------------
Description changed by TheLastLovemark:
Old description:
> I tried to install flann with: {{{sh-3.2# port -vd install flann +gcc9
> +debug +openmpi +python37}}}
>
> which gave me this debug error message:
> {{{
> -- The C compiler identification is GNU 9.2.0
> -- The CXX compiler identification is GNU 9.2.0
> -- Checking whether C compiler has -isysroot
> -- Checking whether C compiler has -isysroot - yes
> -- Checking whether C compiler supports OSX deployment target flag
> -- Checking whether C compiler supports OSX deployment target flag - yes
> -- Check for working C compiler: /opt/local/bin/mpicc-openmpi-gcc9
> -- Check for working C compiler: /opt/local/bin/mpicc-openmpi-gcc9 --
> broken
> CMake Error at
> /opt/local/share/cmake-3.16/Modules/CMakeTestCCompiler.cmake:60
> (message):
> The C compiler
>
> "/opt/local/bin/mpicc-openmpi-gcc9"
>
> is not able to compile a simple test program.
>
> It fails with the following output:
>
> Change Dir:
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_flann/flann/work/build/CMakeFiles/CMakeTmp
>
> Run Build Command(s):/usr/bin/make cmTC_283d7/fast &&
> /Library/Developer/CommandLineTools/usr/bin/make -f
> CMakeFiles/cmTC_283d7.dir/build.make CMakeFiles/cmTC_283d7.dir/build
> Building C object CMakeFiles/cmTC_283d7.dir/testCCompiler.c.o
> /opt/local/bin/mpicc-openmpi-gcc9 -pipe -Os -g -fno-limit-debug-
> info -DDEBUG -I/opt/local/include -arch x86_64 -mmacosx-version-
> min=10.13 -o CMakeFiles/cmTC_283d7.dir/testCCompiler.c.o -c
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_flann/flann/work/build/CMakeFiles/CMakeTmp/testCCompiler.c
> gcc-mp-9: error: unrecognized command line option '-fno-limit-debug-
> info'
> make[1]: *** [CMakeFiles/cmTC_283d7.dir/testCCompiler.c.o] Error 1
> make: *** [cmTC_283d7/fast] Error 2
>
>
>
> CMake will not be able to correctly generate this project.
> Call Stack (most recent call first):
> CMakeLists.txt:7 (project)
>
> -- Configuring incomplete, errors occurred!
> See also
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_flann/flann/work/build/CMakeFiles/CMakeOutput.log".
> See also
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_flann/flann/work/build/CMakeFiles/CMakeError.log".
> Command failed: cd
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_flann/flann/work/build"
> && /opt/local/bin/cmake -G "CodeBlocks - Unix Makefiles"
> -DCMAKE_BUILD_TYPE=MacPorts -DCMAKE_INSTALL_PREFIX="/opt/local"
> -DCMAKE_INSTALL_NAME_DIR="/opt/local/lib"
> -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_C_COMPILER="$CC"
> -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_POLICY_DEFAULT_CMP0025=NEW
> -DCMAKE_POLICY_DEFAULT_CMP0060=NEW -DCMAKE_VERBOSE_MAKEFILE=ON
> -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_FIND_FRAMEWORK=LAST
> -DCMAKE_EXPORT_COMPILE_COMMANDS=ON -DCMAKE_MAKE_PROGRAM=/usr/bin/make
> -DCMAKE_MODULE_PATH="/opt/local/share/cmake/Modules"
> -DCMAKE_PREFIX_PATH="/opt/local/share/cmake/Modules"
> -DCMAKE_BUILD_WITH_INSTALL_RPATH:BOOL=ON
> -DCMAKE_INSTALL_RPATH="/opt/local/lib" -Wno-dev flann-1.9.1
> -DBUILD_MATLAB_BINDINGS=OFF -DBUILD_CUDA_LIB=OFF -DUSE_MPI=ON
> -DCMAKE_STRIP:FILEPATH=/bin/echo
> -DPYTHON_EXECUTABLE=/opt/local/bin/python3.7
> -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.13"
> -DCMAKE_OSX_SYSROOT="/"
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_flann/flann/work/flann-1.9.1
> Exit code: 1
> Error: Failed to configure flann: configure failure: command execution
> failed
> }}}
>
> Initially I did not have an mpi selection set.
>
> I changed that with:
>
> {{{
> sh-3.2# port select --set mpi openmpi-gcc9-fortran
> Selecting 'openmpi-gcc9-fortran' for 'mpi' succeeded. 'openmpi-
> gcc9-fortran' is now active.
> }}}
>
> which yelded:
>
> {{{
> $ port select --summary
> Name Selected Options
> ==== ======== =======
> clang mp-clang-9.0 mp-clang-3.7 mp-clang-9.0 none
> cython cython37 cython27 cython37 cython38 none
> gcc mp-gcc9 mp-gcc5 mp-gcc6 mp-gcc7 mp-gcc8 mp-gcc9
> none
> ipython py37-ipython py37-ipython py38-ipython none
> ipython3 py37-ipython py37-ipython py38-ipython none
> llvm mp-llvm-9.0 mp-llvm-3.7 mp-llvm-7.0 mp-llvm-8.0 mp-
> llvm-9.0 none
> mpi openmpi-gcc9-fortran mpich-mp-fortran openmpi-clang90-fortran
> openmpi-gcc9-fortran openmpi-mp-fortran none
> nosetests nosetests37 nosetests27 nosetests37 nosetests38 none
> pip pip37 pip27 pip37 pip38 none
> pip2 pip27 pip27 none
> pip3 pip37 pip37 pip38 none
> pygments py37-pygments py27-pygments py37-pygments
> py38-pygments none
> pytest pytest37 pytest37 pytest38 none
> python python37 python27 python27-apple python37
> python38 none
> python2 python27 python27 python27-apple none
> python3 python37 python37 python38 none
> sphinx py37-sphinx py27-sphinx py37-sphinx py38-sphinx none
> wxWidgets none wxWidgets-3.0 none
> }}}
>
> The log file is attached.
>
> Thanks for all your help!
New description:
I tried to install flann with: {{{sh-3.2# port -vd install flann +gcc9
+debug +openmpi +python37}}}
which gave me this debug error message:
{{{
-- The C compiler identification is GNU 9.2.0
-- The CXX compiler identification is GNU 9.2.0
-- Checking whether C compiler has -isysroot
-- Checking whether C compiler has -isysroot - yes
-- Checking whether C compiler supports OSX deployment target flag
-- Checking whether C compiler supports OSX deployment target flag - yes
-- Check for working C compiler: /opt/local/bin/mpicc-openmpi-gcc9
-- Check for working C compiler: /opt/local/bin/mpicc-openmpi-gcc9 --
broken
CMake Error at
/opt/local/share/cmake-3.16/Modules/CMakeTestCCompiler.cmake:60 (message):
The C compiler
"/opt/local/bin/mpicc-openmpi-gcc9"
is not able to compile a simple test program.
It fails with the following output:
Change Dir:
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_flann/flann/work/build/CMakeFiles/CMakeTmp
Run Build Command(s):/usr/bin/make cmTC_283d7/fast &&
/Library/Developer/CommandLineTools/usr/bin/make -f
CMakeFiles/cmTC_283d7.dir/build.make CMakeFiles/cmTC_283d7.dir/build
Building C object CMakeFiles/cmTC_283d7.dir/testCCompiler.c.o
/opt/local/bin/mpicc-openmpi-gcc9 -pipe -Os -g -fno-limit-debug-info
-DDEBUG -I/opt/local/include -arch x86_64 -mmacosx-version-min=10.13 -o
CMakeFiles/cmTC_283d7.dir/testCCompiler.c.o -c
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_flann/flann/work/build/CMakeFiles/CMakeTmp/testCCompiler.c
gcc-mp-9: error: unrecognized command line option '-fno-limit-debug-
info'
make[1]: *** [CMakeFiles/cmTC_283d7.dir/testCCompiler.c.o] Error 1
make: *** [cmTC_283d7/fast] Error 2
CMake will not be able to correctly generate this project.
Call Stack (most recent call first):
CMakeLists.txt:7 (project)
-- Configuring incomplete, errors occurred!
See also
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_flann/flann/work/build/CMakeFiles/CMakeOutput.log".
See also
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_flann/flann/work/build/CMakeFiles/CMakeError.log".
Command failed: cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_flann/flann/work/build"
&& /opt/local/bin/cmake -G "CodeBlocks - Unix Makefiles"
-DCMAKE_BUILD_TYPE=MacPorts -DCMAKE_INSTALL_PREFIX="/opt/local"
-DCMAKE_INSTALL_NAME_DIR="/opt/local/lib"
-DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_C_COMPILER="$CC"
-DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_POLICY_DEFAULT_CMP0025=NEW
-DCMAKE_POLICY_DEFAULT_CMP0060=NEW -DCMAKE_VERBOSE_MAKEFILE=ON
-DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_FIND_FRAMEWORK=LAST
-DCMAKE_EXPORT_COMPILE_COMMANDS=ON -DCMAKE_MAKE_PROGRAM=/usr/bin/make
-DCMAKE_MODULE_PATH="/opt/local/share/cmake/Modules"
-DCMAKE_PREFIX_PATH="/opt/local/share/cmake/Modules"
-DCMAKE_BUILD_WITH_INSTALL_RPATH:BOOL=ON
-DCMAKE_INSTALL_RPATH="/opt/local/lib" -Wno-dev flann-1.9.1
-DBUILD_MATLAB_BINDINGS=OFF -DBUILD_CUDA_LIB=OFF -DUSE_MPI=ON
-DCMAKE_STRIP:FILEPATH=/bin/echo
-DPYTHON_EXECUTABLE=/opt/local/bin/python3.7
-DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.13"
-DCMAKE_OSX_SYSROOT="/"
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_flann/flann/work/flann-1.9.1
Exit code: 1
Error: Failed to configure flann: configure failure: command execution
failed
}}}
Initially I did not have an mpi selection set.
I changed that with:
{{{
sh-3.2# port select --set mpi openmpi-gcc9-fortran
Selecting 'openmpi-gcc9-fortran' for 'mpi' succeeded. 'openmpi-
gcc9-fortran' is now active.
}}}
which yelded:
{{{
$ port select --summary
Name Selected Options
==== ======== =======
clang mp-clang-9.0 mp-clang-3.7 mp-clang-9.0 none
cython cython37 cython27 cython37 cython38 none
gcc mp-gcc9 mp-gcc5 mp-gcc6 mp-gcc7 mp-gcc8 mp-gcc9
none
ipython py37-ipython py37-ipython py38-ipython none
ipython3 py37-ipython py37-ipython py38-ipython none
llvm mp-llvm-9.0 mp-llvm-3.7 mp-llvm-7.0 mp-llvm-8.0 mp-
llvm-9.0 none
mpi openmpi-gcc9-fortran mpich-mp-fortran openmpi-clang90-fortran
openmpi-gcc9-fortran openmpi-mp-fortran none
nosetests nosetests37 nosetests27 nosetests37 nosetests38 none
pip pip37 pip27 pip37 pip38 none
pip2 pip27 pip27 none
pip3 pip37 pip37 pip38 none
pygments py37-pygments py27-pygments py37-pygments py38-pygments
none
pytest pytest37 pytest37 pytest38 none
python python37 python27 python27-apple python37 python38
none
python2 python27 python27 python27-apple none
python3 python37 python37 python38 none
sphinx py37-sphinx py27-sphinx py37-sphinx py38-sphinx none
wxWidgets none wxWidgets-3.0 none
}}}
I ran {{{sh-3.2# port -vd install flann +gcc9 +debug +openmpi +python37}}}
again, but it still failed.
The log file is attached.
Thanks for all your help!
--
--
Ticket URL: <https://trac.macports.org/ticket/59973#comment:1>
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