[MacPorts] #57938: scalapack @2.0.2_4 +openmpi failed configure on macOS Mojave

MacPorts noreply at macports.org
Sat Jun 13 08:24:12 UTC 2020 

#57938: scalapack @2.0.2_4 +openmpi failed configure on macOS Mojave
------------------------+----------------------
  Reporter:  Bianca338  |      Owner:  (none)
      Type:  defect     |     Status:  assigned
  Priority:  Normal     |  Milestone:
 Component:  ports      |    Version:
Resolution:             |   Keywords:
      Port:  scalapack  |
------------------------+----------------------

Old description:

> Configuration fails when building BLACS.
>
> A similar issue was reported in ticket:52316 with the MPI implementation
> mpich and was resolved in revision https://github.com/macports/macports-
> ports/commit/9b1bac79563d8402d6352ffb0a86c9f3bad9fe88#diff-
> af4fc063fec009d42130985002ebc6d0.
> However, the issue is still there when configuring scalapack with
> openmpi.
>
> Here are the last few lines of the main log file (scalapack/main.log):
>
> {{{
> :info:configure -- =========
> :info:configure -- Compiling and Building BLACS INSTALL Testing to set
> correct variables
> :info:configure CMake Error at CMAKE/FortranMangling.cmake:27 (MESSAGE):
> :info:configure    Configure in the BLACS INSTALL directory FAILED
> :info:configure Call Stack (most recent call first):
> :info:configure   CMakeLists.txt:122 (COMPILE)
> :info:configure -- Configuring incomplete, errors occurred!
> :info:configure See also
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_scalapack/scalapack/work/build/CMakeFiles/CMakeOutput.log".
> :info:configure Command failed:  cd
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_scalapack/scalapack/work/build"
> && /opt/local/bin/cmake -G "CodeBlocks - Unix Makefiles"
> -DCMAKE_BUILD_TYPE=MacPorts -DCMAKE_INSTALL_PREFIX="/opt/local"
> -DCMAKE_INSTALL_NAME_DIR="/opt/local/lib"
> -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_C_COMPILER="$CC"
> -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_POLICY_DEFAULT_CMP0025=NEW
> -DCMAKE_POLICY_DEFAULT_CMP0060=NEW -DCMAKE_VERBOSE_MAKEFILE=ON
> -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_FIND_FRAMEWORK=LAST
> -DCMAKE_EXPORT_COMPILE_COMMANDS=ON
> -DCMAKE_MODULE_PATH="/opt/local/share/cmake/Modules"
> -DCMAKE_PREFIX_PATH="/opt/local/share/cmake/Modules"
> -DCMAKE_BUILD_WITH_INSTALL_RPATH:BOOL=ON
> -DCMAKE_INSTALL_RPATH="/opt/local/lib" -Wno-dev
> -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DBUILD_SHARED_LIBS=ON
> -DBUILD_TESTING=ON -DCMAKE_OSX_ARCHITECTURES="x86_64"
> -DCMAKE_OSX_DEPLOYMENT_TARGET="10.14"
> -DCMAKE_OSX_SYSROOT="/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk"
> -DMPI_C_COMPILER=mpicc-openmpi-mp -DMPI_Fortran_COMPILER=mpif90-openmpi-
> mp -DMPIEXEC=/opt/local/bin/mpiexec-openmpi-mp
> -DLAPACK_LIBRARIES="-L/opt/local/lib -lvecLibFort"
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_scalapack/scalapack/work/scalapack-2.0.2
> :info:configure Exit code: 1
> :error:configure Failed to configure scalapack: configure failure:
> command execution failed
> :debug:configure Error code: NONE
> :debug:configure Backtrace: configure failure: command execution failed
> :debug:configure     while executing
> :debug:configure "$procedure $targetname"
>
> }}}
>
> and here are the last few lines of the CMake log file in
> scalapack/work/build/CMakeFiles/CMakeOutput.log
>
> {{{
> Determining if the Fortran compiler supports Fortran 90 passed with the
> following output:
> Change Dir:
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_scalapack/scalapack/work/build/CMakeFiles/CMakeTmp
>
> Run Build Command:"/opt/local/bin/gmake" "cmTC_82c3d/fast"
> /opt/local/bin/gmake -f CMakeFiles/cmTC_82c3d.dir/build.make
> CMakeFiles/cmTC_82c3d.dir/build
> gmake[1]: Entering directory
> '/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_scalapack/scalapack/work/build/CMakeFiles/CMakeTmp'
> Building Fortran object
> CMakeFiles/cmTC_82c3d.dir/testFortranCompilerF90.f90.o
> /opt/local/bin/mpif90-openmpi-mp   -pipe -Os  -arch x86_64 -isysroot
> /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk
> -mmacosx-version-min=10.14   -c
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_scalapack/scalapack/work/build/CMakeFiles/CMakeTmp/testFortranCompilerF90.f90
> -o CMakeFiles/cmTC_82c3d.dir/testFortranCompilerF90.f90.o
> Linking Fortran executable cmTC_82c3d
> /opt/local/bin/cmake -E cmake_link_script
> CMakeFiles/cmTC_82c3d.dir/link.txt --verbose=1
> /opt/local/bin/mpif90-openmpi-mp  -L/opt/local/lib
> -Wl,-headerpad_max_install_names
> -Wl,-syslibroot,/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk
> -pipe -Os  -arch x86_64 -isysroot
> /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk
> -mmacosx-version-min=10.14
> CMakeFiles/cmTC_82c3d.dir/testFortranCompilerF90.f90.o  -o cmTC_82c3d
> gmake[1]: Leaving directory
> '/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_scalapack/scalapack/work/build/CMakeFiles/CMakeTmp'
>
> }}}

New description:

 Configuration fails when building BLACS.

 A similar issue was reported in ticket:52316 with the MPI implementation
 mpich and was resolved in revision
 [9b1bac79563d8402d6352ffb0a86c9f3bad9fe88/macports-ports].
 However, the issue is still there when configuring scalapack with openmpi.

 Here are the last few lines of the main log file (scalapack/main.log):

 {{{
 :info:configure -- =========
 :info:configure -- Compiling and Building BLACS INSTALL Testing to set
 correct variables
 :info:configure CMake Error at CMAKE/FortranMangling.cmake:27 (MESSAGE):
 :info:configure    Configure in the BLACS INSTALL directory FAILED
 :info:configure Call Stack (most recent call first):
 :info:configure   CMakeLists.txt:122 (COMPILE)
 :info:configure -- Configuring incomplete, errors occurred!
 :info:configure See also
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_scalapack/scalapack/work/build/CMakeFiles/CMakeOutput.log".
 :info:configure Command failed:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_scalapack/scalapack/work/build"
 && /opt/local/bin/cmake -G "CodeBlocks - Unix Makefiles"
 -DCMAKE_BUILD_TYPE=MacPorts -DCMAKE_INSTALL_PREFIX="/opt/local"
 -DCMAKE_INSTALL_NAME_DIR="/opt/local/lib"
 -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_C_COMPILER="$CC"
 -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_POLICY_DEFAULT_CMP0025=NEW
 -DCMAKE_POLICY_DEFAULT_CMP0060=NEW -DCMAKE_VERBOSE_MAKEFILE=ON
 -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_FIND_FRAMEWORK=LAST
 -DCMAKE_EXPORT_COMPILE_COMMANDS=ON
 -DCMAKE_MODULE_PATH="/opt/local/share/cmake/Modules"
 -DCMAKE_PREFIX_PATH="/opt/local/share/cmake/Modules"
 -DCMAKE_BUILD_WITH_INSTALL_RPATH:BOOL=ON
 -DCMAKE_INSTALL_RPATH="/opt/local/lib" -Wno-dev
 -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DBUILD_SHARED_LIBS=ON
 -DBUILD_TESTING=ON -DCMAKE_OSX_ARCHITECTURES="x86_64"
 -DCMAKE_OSX_DEPLOYMENT_TARGET="10.14"
 -DCMAKE_OSX_SYSROOT="/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk"
 -DMPI_C_COMPILER=mpicc-openmpi-mp -DMPI_Fortran_COMPILER=mpif90-openmpi-mp
 -DMPIEXEC=/opt/local/bin/mpiexec-openmpi-mp
 -DLAPACK_LIBRARIES="-L/opt/local/lib -lvecLibFort"
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_scalapack/scalapack/work/scalapack-2.0.2
 :info:configure Exit code: 1
 :error:configure Failed to configure scalapack: configure failure: command
 execution failed
 :debug:configure Error code: NONE
 :debug:configure Backtrace: configure failure: command execution failed
 :debug:configure     while executing
 :debug:configure "$procedure $targetname"

 }}}

 and here are the last few lines of the CMake log file in
 scalapack/work/build/CMakeFiles/CMakeOutput.log

 {{{
 Determining if the Fortran compiler supports Fortran 90 passed with the
 following output:
 Change Dir:
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_scalapack/scalapack/work/build/CMakeFiles/CMakeTmp

 Run Build Command:"/opt/local/bin/gmake" "cmTC_82c3d/fast"
 /opt/local/bin/gmake -f CMakeFiles/cmTC_82c3d.dir/build.make
 CMakeFiles/cmTC_82c3d.dir/build
 gmake[1]: Entering directory
 '/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_scalapack/scalapack/work/build/CMakeFiles/CMakeTmp'
 Building Fortran object
 CMakeFiles/cmTC_82c3d.dir/testFortranCompilerF90.f90.o
 /opt/local/bin/mpif90-openmpi-mp   -pipe -Os  -arch x86_64 -isysroot
 /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk
 -mmacosx-version-min=10.14   -c
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_scalapack/scalapack/work/build/CMakeFiles/CMakeTmp/testFortranCompilerF90.f90
 -o CMakeFiles/cmTC_82c3d.dir/testFortranCompilerF90.f90.o
 Linking Fortran executable cmTC_82c3d
 /opt/local/bin/cmake -E cmake_link_script
 CMakeFiles/cmTC_82c3d.dir/link.txt --verbose=1
 /opt/local/bin/mpif90-openmpi-mp  -L/opt/local/lib
 -Wl,-headerpad_max_install_names
 -Wl,-syslibroot,/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk
 -pipe -Os  -arch x86_64 -isysroot
 /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk
 -mmacosx-version-min=10.14
 CMakeFiles/cmTC_82c3d.dir/testFortranCompilerF90.f90.o  -o cmTC_82c3d
 gmake[1]: Leaving directory
 '/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_scalapack/scalapack/work/build/CMakeFiles/CMakeTmp'

 }}}

--

Comment (by ryandesign):

 Does the problem remain with scalapack 2.1.0? If so, please attach the
 entire main.log and CMakeOutput.log.

-- 
Ticket URL: <https://trac.macports.org/ticket/57938#comment:5>
MacPorts <https://www.macports.org/>
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