[MacPorts] #61258: atlas @3.10.2: error: implicit declaration of function 'dgeqlf_' is invalid in C99 (was: atlas-3.10.2: error: "Failed to build atlas: command execution failed")

[MacPorts]

#61258: atlas @3.10.2: error: implicit declaration of function 'dgeqlf_' is invalid
in C99
-----------------------+----------------------
  Reporter:  gsarrouh  |      Owner:  Veence
      Type:  defect    |     Status:  assigned
  Priority:  Normal    |  Milestone:
 Component:  ports     |    Version:  2.6.3
Resolution:            |   Keywords:
      Port:  atlas     |
-----------------------+----------------------
Changes (by ryandesign):

 * status:  new => assigned
 * cc: aronnax@… (removed)
 * keywords:  atlas, source extractor =>
 * owner:  (none) => Veence
 * port:  source-extractor => atlas


Old description:

> I am trying to install Source Extractor v.2.19.5 using the terminal
> command: >> sudo port install source-extractor
>
> Three dependencies are required: i) atlas;  i) fftw-3;  iii)
> fftw-3-single
>
> When I execute the command i get the following output:
>
> gsarrouh$ sudo port install source-extractor
> Password:
>
> --->  Computing dependencies for source-extractor
>
> The following dependencies will be installed:
>  atlas
>  fftw-3
>  fftw-3-single
> Continue? [Y/n]: Y
>
> --->  Fetching archive for atlas
>
> --->  Attempting to fetch atlas-3.10.2_2.darwin_19.x86_64.tbz2 from
> https://packages.macports.org/atlas
>
> --->  Attempting to fetch atlas-3.10.2_2.darwin_19.x86_64.tbz2 from
> https://ywg.ca.packages.macports.org/mirror/macports/packages/atlas/atlas
>
> --->  Attempting to fetch atlas-3.10.2_2.darwin_19.x86_64.tbz2 from
> https://mse.uk.packages.macports.org/atlas
>
> --->  Fetching distfiles for atlas
>
> --->  Attempting to fetch atlas3.10.2.tar.bz2 from
> http://ykf.ca.distfiles.macports.org/MacPorts/mpdistfiles/atlas
>
> --->  Attempting to fetch lapack-3.6.0.tgz from
> http://ykf.ca.distfiles.macports.org/MacPorts/mpdistfiles/atlas
>
> --->  Verifying checksums for atlas
>
> --->  Extracting atlas
>
> --->  Applying patches to atlas
>
> --->  Configuring atlas
>
> Selected C compiler: /usr/bin/clang
>
> Selected F77 compiler: gfortrandevel
>
> Warning: reinplace s|-no-cpp-precomp||g didn't change anything in
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/CONFIG/src/atlcomp.txt
>
> --->  Building atlas
>
> Error: Failed to build atlas: command execution failed
>
> Error: See
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/main.log
> for details.
>
> Error: Follow https://guide.macports.org/#project.tickets to report a
> bug.
>
> Error: Processing of port source-extractor failed
>

> I really have no idea why altas is failing the build stage, but I cannot
> use a different software package other than Source Extractor for my work
> so I really need this to work!
>
> Thanks for your help in advance,
> ghassan

New description:

 I am trying to install Source Extractor v.2.19.5 using the terminal
 command: >> `sudo port install source-extractor`

 Three dependencies are required: i) atlas;  i) fftw-3;  iii) fftw-3-single

 When I execute the command i get the following output:

 {{{
 gsarrouh$ sudo port install source-extractor
 Password:
 --->  Computing dependencies for source-extractor
 The following dependencies will be installed:
  atlas
  fftw-3
  fftw-3-single
 Continue? [Y/n]: Y
 --->  Fetching archive for atlas
 --->  Attempting to fetch atlas-3.10.2_2.darwin_19.x86_64.tbz2 from
 https://packages.macports.org/atlas
 --->  Attempting to fetch atlas-3.10.2_2.darwin_19.x86_64.tbz2 from
 https://ywg.ca.packages.macports.org/mirror/macports/packages/atlas/atlas
 --->  Attempting to fetch atlas-3.10.2_2.darwin_19.x86_64.tbz2 from
 https://mse.uk.packages.macports.org/atlas
 --->  Fetching distfiles for atlas
 --->  Attempting to fetch atlas3.10.2.tar.bz2 from
 http://ykf.ca.distfiles.macports.org/MacPorts/mpdistfiles/atlas
 --->  Attempting to fetch lapack-3.6.0.tgz from
 http://ykf.ca.distfiles.macports.org/MacPorts/mpdistfiles/atlas
 --->  Verifying checksums for atlas
 --->  Extracting atlas
 --->  Applying patches to atlas
 --->  Configuring atlas
 Selected C compiler: /usr/bin/clang
 Selected F77 compiler: gfortrandevel
 Warning: reinplace s|-no-cpp-precomp||g didn't change anything in
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/CONFIG/src/atlcomp.txt
 --->  Building atlas
 Error: Failed to build atlas: command execution failed
 Error: See
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/main.log
 for details.
 Error: Follow https://guide.macports.org/#project.tickets to report a bug.
 Error: Processing of port source-extractor failed
 }}}

 I really have no idea why altas is failing the build stage, but I cannot
 use a different software package other than Source Extractor for my work
 so I really need this to work!

 Thanks for your help in advance,\\
 ghassan

--

-- 
Ticket URL: <https://trac.macports.org/ticket/61258#comment:3>
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