[MacPorts] #62678: netcdf 4.8.0: update fails after libstdc++ headers not found

Sun Apr 18 01:00:57 UTC 2021

#62678: netcdf 4.8.0: update fails after libstdc++ headers not found
---------------------------+----------------------
  Reporter:  thiagoveloso  |      Owner:  tenomoto
      Type:  defect        |     Status:  assigned
  Priority:  Normal        |  Milestone:
 Component:  ports         |    Version:  2.6.4
Resolution:                |   Keywords:
      Port:  netcdf        |
---------------------------+----------------------

Comment (by EJFielding):

 I am getting the same error as @thiagoveloso on Catalina v10.15.7. I think
 this is the relevant part of the log:

 {{{
 version:1
 :debug:sysinfo macOS 10.15 (darwin/19.6.0) arch i386
 :debug:sysinfo MacPorts 2.6.4
 :debug:sysinfo Xcode 12.4
 :debug:sysinfo SDK 10.15
 :debug:sysinfo MACOSX_DEPLOYMENT_TARGET: 10.15
 :msg:main --->  Computing dependencies for netcdf:info:main .:debug:main
 netcdf has no conflicts
 :debug:main Searching for dependency: cmake
 :debug:main Found Dependency: receipt exists for cmake
 :debug:main Searching for dependency: openmpi-default
 :debug:main Found Dependency: receipt exists for openmpi-default
 :debug:main Searching for dependency: hdf5
 :debug:main Found Dependency: receipt exists for hdf5
 :debug:main Searching for dependency: curl
 :debug:main Found Dependency: receipt exists for curl
 :debug:main Executing org.macports.main (netcdf)
 :debug:main dropping privileges: euid changed to 502, egid changed to 20.
 :debug:archivefetch archivefetch phase started at Sat Apr 17 12:31:42 PDT
 2021
 :msg:archivefetch --->  Fetching archive for netcdf
 :debug:archivefetch Executing proc-pre-org.macports.archivefetch-
 archivefetch-0
 :debug:archivefetch Executing proc-pre-org.macports.archivefetch-
 archivefetch-1
 :debug:archivefetch mpi.enforce_variant list:  hdf5
 :debug:archivefetch hdf5 is installed with the following variants:
 +cxx+hl+openmpi
 :debug:archivefetch   required: , forbidden:
 :debug:archivefetch   accepted
 :debug:archivefetch hdf5 is installed with the following variants:
 +cxx+hl+openmpi
 :debug:archivefetch   required: mpich, forbidden:
 :debug:archivefetch   rejected, because required variant mpich is missing
 :debug:archivefetch hdf5 is installed with the following variants:
 +cxx+hl+openmpi
 :debug:archivefetch   required: openmpi, forbidden:
 :debug:archivefetch   accepted
 :debug:archivefetch Executing org.macports.archivefetch (netcdf)
 :debug:archivefetch euid/egid changed to: 0/0
 :debug:archivefetch chowned /opt/local/var/macports/incoming to macports
 :debug:archivefetch euid/egid changed to: 502/20
 :info:archivefetch --->
 netcdf-4.8.0_0+cdf5+dap+netcdf4+openmpi.darwin_19.x86_64.tbz2 doesn't seem
 to exist in /opt/local/var/macports/incoming/verified
 :msg:archivefetch --->  Attempting to fetch
 netcdf-4.8.0_0+cdf5+dap+netcdf4+openmpi.darwin_19.x86_64.tbz2 from
 https://ywg.ca.packages.macports.org/mirror/macports/packages/netcdf
 :debug:archivefetch Fetching archive failed: The requested URL returned
 error: 404 Not Found
 :msg:archivefetch --->  Attempting to fetch
 netcdf-4.8.0_0+cdf5+dap+netcdf4+openmpi.darwin_19.x86_64.tbz2 from
 https://kmq.jp.packages.macports.org/netcdf
 :debug:archivefetch Fetching archive failed: The requested URL returned
 error: 404 Not Found
 :msg:archivefetch --->  Attempting to fetch
 netcdf-4.8.0_0+cdf5+dap+netcdf4+openmpi.darwin_19.x86_64.tbz2 from
 https://mse.uk.packages.macports.org/netcdf
 :debug:archivefetch Fetching archive failed: The requested URL returned
 error: 404 Not Found
 :debug:archivefetch Privilege de-escalation not attempted as not running
 as root.
 :debug:fetch fetch phase started at Sat Apr 17 12:31:44 PDT 2021
 :notice:fetch --->  Fetching distfiles for netcdf
 :debug:fetch Executing proc-pre-org.macports.fetch-fetch-0
 :debug:fetch Executing proc-pre-org.macports.fetch-fetch-1
 :debug:fetch mpi.enforce_variant list:  hdf5
 :debug:fetch hdf5 is installed with the following variants:
 +cxx+hl+openmpi
 :debug:fetch   required: , forbidden:
 :debug:fetch   accepted
 :debug:fetch hdf5 is installed with the following variants:
 +cxx+hl+openmpi
 :debug:fetch   required: mpich, forbidden:
 :debug:fetch   rejected, because required variant mpich is missing
 :debug:fetch hdf5 is installed with the following variants:
 +cxx+hl+openmpi
 :debug:fetch   required: openmpi, forbidden:
 :debug:fetch   accepted
 :debug:fetch Executing org.macports.fetch (netcdf)
 ...
 :info:configure -- Found Math library:
 /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/lib/libm.tbd
 :info:configure -- Found MPI_C: /opt/local/bin/mpicc-openmpi-mp (found
 version "3.1")
 :info:configure -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES
 MPI_CXX_HEADER_DIR MPI_CXX_WORKS)
 :info:configure CMake Error at
 /opt/local/share/cmake-3.19/Modules/FindPackageHandleStandardArgs.cmake:218
 (message):
 :info:configure   Could NOT find MPI (missing: MPI_CXX_FOUND) (found
 version "3.1")
 :info:configure       Reason given by package: MPI component 'Fortran' was
 requested, but language Fortran is not enabled.
 :info:configure Call Stack (most recent call first):
 :info:configure
 /opt/local/share/cmake-3.19/Modules/FindPackageHandleStandardArgs.cmake:582
 (_FPHSA_FAILURE_MESSAGE)
 :info:configure   /opt/local/share/cmake-3.19/Modules/FindMPI.cmake:1722
 (find_package_handle_standard_args)
 :info:configure   CMakeLists.txt:1208 (FIND_PACKAGE)
 :info:configure -- Configuring incomplete, errors occurred!
 :info:configure See also
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_netcdf/netcdf/work/build/CMakeFiles/CMakeOutput.log".
 :info:configure See also
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_netcdf/netcdf/work/build/CMakeFiles/CMakeError.log".
 :info:configure Command failed:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_netcdf/netcdf/work/build"
 && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local'
 -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON
 -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON
 -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST
 -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib
 -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MAKE_PROGRAM=/usr/bin/make
 -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules
 -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/opt/local;/usr"
 -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_POLICY_DEFAULT_CMP0025=NEW -Wno-dev
 -DCMAKE_PREFIX_PATH=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_netcdf/netcdf/work/netcdf-c-4.8.0/cmake/modules
 -DENABLE_PARALLEL_TESTS=ON -DENABLE_NETCDF_4=ON -DENABLE_DAP=ON
 -DENABLE_DAP_REMOTE_TESTS=OFF -DENABLE_CDF5=ON
 -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG"
 -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.15"
 -DCMAKE_OSX_SYSROOT="/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk"
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_netcdf/netcdf/work/netcdf-c-4.8.0
 :info:configure Exit code: 1
 :error:configure Failed to configure netcdf: configure failure: command
 execution failed

 }}}

-- 
Ticket URL: <https://trac.macports.org/ticket/62678#comment:16>
MacPorts <https://www.macports.org/>
Ports system for macOS