[MacPorts] #62488: py38-scipy - vodemodule.c - fatal error: 'threads.h' not found

MacPorts noreply at macports.org
Thu Mar 18 16:11:14 UTC 2021 

#62488: py38-scipy -  vodemodule.c - fatal error: 'threads.h' not found
------------------------+------------------------
 Reporter:  dyne2meter  |      Owner:  (none)
     Type:  defect      |     Status:  new
 Priority:  Normal      |  Milestone:
Component:  ports       |    Version:  2.6.4
 Keywords:              |       Port:  py38-scipy
------------------------+------------------------
 Legacy system issue - MacOS 10.11.6

 {{{
 info:build extra options: '-msse -msse2 -msse3'
 :info:build clang:
 build/src.macosx-10.11-x86_64-3.8/scipy/integrate/vodemodule.c
 :info:build clang:
 build/src.macosx-10.11-x86_64-3.8/build/src.macosx-10.11-x86_64-3.8/scipy/integrate/fortranobject.c
 :info:build In file included from
 build/src.macosx-10.11-x86_64-3.8/scipy/integrate/vodemodule.c:16:
 :info:build In file included from
 build/src.macosx-10.11-x86_64-3.8/build/src.macosx-10.11-x86_64-3.8/scipy/integrate/fortranobject.h:13:
 :info:build In file included from
 /opt/local/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8
 /site-packages/numpy/core/include/numpy/arrayobject.h:4:
 :info:build In file included from
 /opt/local/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8
 /site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
 :info:build In file included from
 /opt/local/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8
 /site-packages/numpy/core/include/numpy/ndarraytypes.h:1944:
 :info:build
 /opt/local/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8
 /site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2:
 warning: "Using deprecated NumPy API, disable it with "          "#define
 NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
 :info:build #warning "Using deprecated NumPy API, disable it with " \
 :info:build  ^
 :info:build In file included from
 build/src.macosx-10.11-x86_64-3.8/build/src.macosx-10.11-x86_64-3.8/scipy/integrate/fortranobject.c:2:
 :info:build In file included from
 build/src.macosx-10.11-x86_64-3.8/build/src.macosx-10.11-x86_64-3.8/scipy/integrate/fortranobject.h:13:
 :info:build In file included from
 /opt/local/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8
 /site-packages/numpy/core/include/numpy/arrayobject.h:4:
 :info:build In file included from
 /opt/local/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8
 /site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
 :info:build In file included from
 /opt/local/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8
 /site-packages/numpy/core/include/numpy/ndarraytypes.h:1944:
 :info:build
 /opt/local/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8
 /site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2:
 warning: "Using deprecated NumPy API, disable it with "          "#define
 NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
 :info:build #warning "Using deprecated NumPy API, disable it with " \
 :info:build  ^
 :info:build
 build/src.macosx-10.11-x86_64-3.8/scipy/integrate/vodemodule.c:86:10:
 fatal error: 'threads.h' file not found
 :info:build #include <threads.h>
 :info:build          ^
 :info:build 1 warning and 1 error generated.
 :info:build 1 warning generated.
 :info:build Running from SciPy source directory.
 :info:build
 /opt/local/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8
 /site-packages/numpy/distutils/system_info.py:936: UserWarning: Specified
 path /usr/local/include/python3.8 is invalid.
 :info:build   return self.get_paths(self.section, key)
 :info:build
 /opt/local/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8
 /site-packages/numpy/distutils/system_info.py:936: UserWarning: Specified
 path /usr/include/python3.8 is invalid.
 :info:build   return self.get_paths(self.section, key)
 :info:build
 /opt/local/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8
 /site-packages/numpy/distutils/system_info.py:936: UserWarning: Specified
 path /opt/local/include/python3.8 is invalid.
 :info:build   return self.get_paths(self.section, key)
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'float'
 :info:build append_needs: unknown need 'float'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'float'
 :info:build append_needs: unknown need 'float'
 :info:build append_needs: unknown need 'float'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'int'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build append_needs: unknown need 'double'
 :info:build ########### EXT COMPILER OPTIMIZATION ###########
 :info:build Platform      :
 :info:build   Architecture: x64
 :info:build   Compiler    : clang
 :info:build CPU baseline  :
 :info:build   Requested   : 'min'
 :info:build   Enabled     : SSE SSE2 SSE3
 :info:build   Flags       : -msse -msse2 -msse3
 :info:build   Extra checks: none
 :info:build CPU dispatch  :
 :info:build   Requested   : 'max -xop -fma4'
 :info:build   Enabled     : SSSE3 SSE41 POPCNT SSE42 AVX F16C FMA3 AVX2
 :info:build   Generated   : none
 :info:build CCompilerOpt._cache_write[796] : write cache to path ->
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_python_py-scipy/py38-scipy/work
 /scipy-scipy-
 f93ad28/build/temp.macosx-10.11-x86_64-3.8/ccompiler_opt_cache_ext.py
 :info:build ########### CLIB COMPILER OPTIMIZATION ###########
 :info:build Platform      :
 :info:build   Architecture: x64
 :info:build   Compiler    : clang
 :info:build CPU baseline  :
 :info:build   Requested   : 'min'
 :info:build   Enabled     : SSE SSE2 SSE3
 :info:build   Flags       : -msse -msse2 -msse3
 :info:build   Extra checks: none
 :info:build CPU dispatch  :
 :info:build   Requested   : 'max -xop -fma4'
 :info:build   Enabled     : SSSE3 SSE41 POPCNT SSE42 AVX F16C FMA3 AVX2
 :info:build   Generated   : none
 :info:build CCompilerOpt._cache_write[796] : write cache to path ->
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_python_py-scipy/py38-scipy/work
 /scipy-scipy-
 f93ad28/build/temp.macosx-10.11-x86_64-3.8/ccompiler_opt_cache_clib.py
 :info:build error: Command "/usr/bin/clang -Wno-unused-result -Wsign-
 compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3
 -Wall -pipe -Os -isysroot/ -I/opt/local/include -DHAVE_CBLAS
 -Ibuild/src.macosx-10.11-x86_64-3.8/build/src.macosx-10.11-x86_64-3.8/scipy/integrate
 -I/opt/local/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8
 /site-packages/numpy/core/include
 -Ibuild/src.macosx-10.11-x86_64-3.8/numpy/distutils/include
 -I/opt/local/Library/Frameworks/Python.framework/Versions/3.8/include/python3.8
 -c build/src.macosx-10.11-x86_64-3.8/scipy/integrate/vodemodule.c -o
 build/temp.macosx-10.11-x86_64-3.8/build/src.macosx-10.11-x86_64-3.8/scipy/integrate/vodemodule.o
 -MMD -MF
 build/temp.macosx-10.11-x86_64-3.8/build/src.macosx-10.11-x86_64-3.8/scipy/integrate/vodemodule.o.d
 -msse -msse2 -msse3" failed with exit status 1
 :info:build Command failed:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_python_py-
 scipy/py38-scipy/work/scipy-1.6.1" &&
 /opt/local/Library/Frameworks/Python.framework/Versions/3.8/bin/python3.8
 setup.py --no-user-cfg config_fc --fcompiler gnu95 --f77exec
 /opt/local/bin/gfortran-mp-10 --f77flags='-m64 -Os -fno-second-underscore'
 --f90exec /opt/local/bin/gfortran-mp-10 --f90flags='-m64 -Os -fno-second-
 underscore' config --cc /usr/bin/clang --include-dirs /opt/local/include
 --library-dirs /opt/local/lib build -j2
 :info:build Exit code: 1
 :error:build Failed to build py38-scipy: command execution failed
 :debug:build Error code: CHILDSTATUS 57990 1
 :debug:build Backtrace: command execution failed
 :debug:build     while executing
 :debug:build "system {*}$notty {*}$nice $fullcmdstring"
 :debug:build     invoked from within
 :debug:build "command_exec build"
 :debug:build     (procedure "portbuild::build_main" line 8)
 :debug:build     invoked from within
 :debug:build "$procedure $targetname"
 :error:build See
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_python_py-scipy/py38-scipy/main.log
 for details.
 }}}

-- 
Ticket URL: <https://trac.macports.org/ticket/62488>
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