[MacPorts] #68545: py311-numpy @1.26.1 build failure - cannot find cython
MacPorts
noreply at macports.org
Wed Oct 25 18:05:59 UTC 2023
#68545: py311-numpy @1.26.1 build failure - cannot find cython
-----------------------+-----------------------
Reporter: RobK88 | Owner: michaelld
Type: defect | Status: assigned
Priority: Normal | Milestone:
Component: ports | Version: 2.8.1
Resolution: | Keywords: lion
Port: py-numpy |
-----------------------+-----------------------
Comment (by RobK88):
I tried to build `py311-numpy` from the git source (with the recommended
patches).
The `cython3` libraries / compiler was found. (i.e. I see `@@@ CYTHON =
'/opt/local/bin/cython-3.11'`. But the build failed for another reason:
{{{
rob$ git clone https://github.com/numpy/numpy.git
Cloning into 'numpy'...
remote: Enumerating objects: 254138, done.
remote: Counting objects: 100% (1143/1143), done.
remote: Compressing objects: 100% (499/499), done.
remote: Total 254138 (delta 689), reused 963 (delta 629), pack-reused
252995
Receiving objects: 100% (254138/254138), 128.99 MiB | 984.00 KiB/s, done.
Resolving deltas: 100% (200239/200239), done.
Updating files: 100% (2124/2124), done.
Grinchs-Mac-Pro-2:git Repos rob$
Grinchs-Mac-Pro-2:git Repos rob$
Grinchs-Mac-Pro-2:git Repos rob$ cd numpy/
Grinchs-Mac-Pro-2:numpy rob$ git checkout v1.26.1
Updating files: 100% (1563/1563), done.
Note: switching to 'v1.26.1'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:
git switch -c <new-branch-name>
Or undo this operation with:
git switch -
Turn off this advice by setting config variable advice.detachedHead to
false
HEAD is now at 411a55b9e Merge pull request #24928 from charris/update-
version
Grinchs-Mac-Pro-2:numpy rob$ git submodule init
Submodule 'doc/source/_static/scipy-mathjax' (https://github.com/scipy
/scipy-mathjax.git) registered for path 'doc/source/_static/scipy-mathjax'
Submodule 'numpy/core/src/npysort/x86-simd-sort'
(https://github.com/intel/x86-simd-sort) registered for path
'numpy/core/src/npysort/x86-simd-sort'
Submodule 'numpy/core/src/umath/svml' (https://github.com/numpy/SVML.git)
registered for path 'numpy/core/src/umath/svml'
Submodule 'vendored-meson/meson' (https://github.com/numpy/meson.git)
registered for path 'vendored-meson/meson'
Submodule 'vendored-meson/meson-python' (https://github.com/numpy/meson-
python.git) registered for path 'vendored-meson/meson-python'
Grinchs-Mac-Pro-2:numpy rob$ git submodule update
Cloning into '/Users/rob/Development/git Repos/numpy/doc/source/_static
/scipy-mathjax'...
Cloning into '/Users/rob/Development/git
Repos/numpy/numpy/core/src/npysort/x86-simd-sort'...
Cloning into '/Users/rob/Development/git
Repos/numpy/numpy/core/src/umath/svml'...
Cloning into '/Users/rob/Development/git Repos/numpy/vendored-
meson/meson'...
Cloning into '/Users/rob/Development/git Repos/numpy/vendored-meson/meson-
python'...
Submodule path 'doc/source/_static/scipy-mathjax': checked out
'36f4c898f2255e0c98eb6949cd67381552d5ffea'
Submodule path 'numpy/core/src/npysort/x86-simd-sort': checked out
'85fbe7d1abca3b9a224ba1c62d52afe9a180f8ef'
Submodule path 'numpy/core/src/umath/svml': checked out
'1b21e453f6b1ba6a6aca392b1d810d9d41576123'
Submodule path 'vendored-meson/meson': checked out
'66ba7dbbfe2838983f65ad8fe16da1535ebf5b9d'
Submodule path 'vendored-meson/meson-python': checked out
'206a31a96458af6cf5e29272b4ea1f6ea500b91b'
Grinchs-Mac-Pro-2:numpy rob$ patch -p0 <
/opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python
/py-numpy/files/patch-build_cython_path.diff
patching file vendored-meson/meson/mesonbuild/envconfig.py
Grinchs-Mac-Pro-2:numpy rob$ patch -p0 <
/Users/rob/Documents/mesonPatch.diff
patching file vendored-meson/meson/meson.py
Grinchs-Mac-Pro-2:numpy rob$ PATH=/opt/local/bin:/usr/bin:/bin
CYTHON=/opt/local/bin/cython-3.11 OPENBLAS=/opt/local/lib MKLROOT=None
ATLAS=None SETUPTOOLS_USE_DISTUTILS=stdlib python3.11 -m build --no-
isolation --wheel
* Getting build dependencies for wheel...
* Building wheel...
+ /opt/local/bin/python3.11 /Users/rob/Development/git Repos/numpy
/vendored-meson/meson/meson.py setup /Users/rob/Development/git
Repos/numpy /Users/rob/Development/git Repos/numpy/.mesonpy-ew44b68j/build
-Dbuildtype=release -Db_ndebug=if-release -Db_vscrt=md --native-
file=/Users/rob/Development/git Repos/numpy/.mesonpy-ew44b68j/build/meson-
python-native-file.ini
@@@ mesonmain = <module 'mesonbuild.mesonmain' from
'/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/mesonmain.py'>
@@@ CYTHON = '/opt/local/bin/cython-3.11'
The Meson build system
Version: 1.2.99
Source dir: /Users/rob/Development/git Repos/numpy
Build dir: /Users/rob/Development/git Repos/numpy/.mesonpy-ew44b68j/build
Build type: native build
Project name: NumPy
Project version: 1.26.1
C compiler for the host machine: ccache cc (clang 4.2 "Apple LLVM version
4.2 (clang-425.0.28) (based on LLVM 3.2svn)")
C linker for the host machine: cc ld64 136
C++ compiler for the host machine: ccache c++ (clang 4.2 "Apple LLVM
version 4.2 (clang-425.0.28) (based on LLVM 3.2svn)")
C++ linker for the host machine: c++ ld64 136
Cython compiler for the host machine: /opt/local/bin/cython-3.11 (cython
0.29.36)
Host machine cpu family: x86
Host machine cpu: i386
Program python found: YES (/opt/local/bin/python3.11)
Found pkg-config: /opt/local/bin/pkg-config (0.29.2)
Run-time dependency python found: YES 3.11
Has header "Python.h" with dependency python-3.11: YES
Compiler for C supports arguments -fno-strict-aliasing: NO
Compiler for C supports arguments -ftrapping-math: NO
Test features "SSE SSE2" : Parial support, missing(SSE SSE2)
Test features "SSE" : Unsupported due to Arguments "-msse, -msse2" are not
supported
Test features "SSE2" : Unsupported due to Implied feature "SSE" is not
supported
Test features "SSE3" : Unsupported due to Implied feature "SSE" is not
supported
Test features "SSSE3" : Unsupported due to Implied feature "SSE" is not
supported
Test features "SSE41" : Unsupported due to Implied feature "SSE" is not
supported
Test features "POPCNT" : Unsupported due to Implied feature "SSE" is not
supported
Test features "SSE42" : Unsupported due to Implied feature "SSE" is not
supported
Test features "AVX" : Unsupported due to Implied feature "SSE" is not
supported
Test features "F16C" : Unsupported due to Implied feature "SSE" is not
supported
Test features "FMA3" : Unsupported due to Implied feature "SSE" is not
supported
Test features "AVX2" : Unsupported due to Implied feature "SSE" is not
supported
Test features "AVX512F" : Unsupported due to Implied feature "SSE" is not
supported
Test features "AVX512CD" : Unsupported due to Implied feature "SSE" is not
supported
Test features "AVX512_KNL" : Unsupported due to Implied feature "SSE" is
not supported
Test features "AVX512_KNM" : Unsupported due to Implied feature "SSE" is
not supported
Test features "AVX512_SKX" : Unsupported due to Implied feature "SSE" is
not supported
Test features "AVX512_CLX" : Unsupported due to Implied feature "SSE" is
not supported
Test features "AVX512_CNL" : Unsupported due to Implied feature "SSE" is
not supported
Test features "AVX512_ICL" : Unsupported due to Implied feature "SSE" is
not supported
Test features "AVX512_SPR" : Unsupported due to Implied feature "SSE" is
not supported
Configuring npy_cpu_dispatch_config.h using configuration
Message:
CPU Optimization Options
baseline:
Requested : min
Enabled :
dispatch:
Requested : max -xop -fma4
Enabled :
Library m found: YES
Found CMake: /opt/local/bin/cmake (3.24.4)
WARNING: CMake Toolchain: Failed to determine CMake compilers state
Run-time dependency scipy-openblas found: NO (tried pkgconfig, framework
and cmake)
WARNING: MKLROOT env var set to /Users/rob/Development/git Repos/numpy
/.mesonpy-ew44b68j/build/None, but not pointing to an MKL install
Run-time dependency mkl found: NO (tried pkgconfig and system)
WARNING: MKLROOT env var set to /Users/rob/Development/git Repos/numpy
/.mesonpy-ew44b68j/build/None, but not pointing to an MKL install
Run-time dependency mkl found: NO (tried pkgconfig and system)
Traceback (most recent call last):
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/mesonmain.py", line 194, in run
return options.run_func(options)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/msetup.py", line 358, in run
app.generate()
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/msetup.py", line 183, in generate
return self._generate(env, capture, vslite_ctx)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/msetup.py", line 228, in _generate
intr.run()
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreter/interpreter.py", line 2997, in run
super().run()
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/interpreterbase.py", line 164, in
run
self.evaluate_codeblock(self.ast, start=1)
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/interpreterbase.py", line 190, in
evaluate_codeblock
raise e
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/interpreterbase.py", line 182, in
evaluate_codeblock
self.evaluate_statement(cur)
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/interpreterbase.py", line 196, in
evaluate_statement
return self.function_call(cur)
^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/interpreterbase.py", line 521, in
function_call
res = func(node, func_args, kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/decorators.py", line 277, in
wrapper
return f(*nargs, **wrapped_kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/decorators.py", line 596, in
wrapper
return f(*wrapped_args, **wrapped_kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreter/interpreter.py", line 2409, in
func_subdir
self.evaluate_codeblock(codeblock)
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/interpreterbase.py", line 190, in
evaluate_codeblock
raise e
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/interpreterbase.py", line 182, in
evaluate_codeblock
self.evaluate_statement(cur)
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/interpreterbase.py", line 206, in
evaluate_statement
return self.evaluate_if(cur)
^^^^^^^^^^^^^^^^^^^^^
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/interpreterbase.py", line 301, in
evaluate_if
self.evaluate_codeblock(i.block)
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/interpreterbase.py", line 190, in
evaluate_codeblock
raise e
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/interpreterbase.py", line 182, in
evaluate_codeblock
self.evaluate_statement(cur)
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/interpreterbase.py", line 228, in
evaluate_statement
self.evaluate_foreach(cur)
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/interpreterbase.py", line 472, in
evaluate_foreach
self.evaluate_codeblock(node.block)
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/interpreterbase.py", line 190, in
evaluate_codeblock
raise e
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/interpreterbase.py", line 182, in
evaluate_codeblock
self.evaluate_statement(cur)
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/interpreterbase.py", line 206, in
evaluate_statement
return self.evaluate_if(cur)
^^^^^^^^^^^^^^^^^^^^^
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/interpreterbase.py", line 306, in
evaluate_if
self.evaluate_codeblock(node.elseblock)
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/interpreterbase.py", line 190, in
evaluate_codeblock
raise e
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/interpreterbase.py", line 182, in
evaluate_codeblock
self.evaluate_statement(cur)
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/interpreterbase.py", line 198, in
evaluate_statement
self.assignment(cur)
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/interpreterbase.py", line 635, in
assignment
value = self.evaluate_statement(node.value)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/interpreterbase.py", line 196, in
evaluate_statement
return self.function_call(cur)
^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/interpreterbase.py", line 521, in
function_call
res = func(node, func_args, kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/decorators.py", line 826, in
wrapped
return f(*wrapped_args, **wrapped_kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/decorators.py", line 826, in
wrapped
return f(*wrapped_args, **wrapped_kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/decorators.py", line 826, in
wrapped
return f(*wrapped_args, **wrapped_kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[Previous line repeated 4 more times]
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/decorators.py", line 109, in
wrapped
ret = f(*wrapped_args, **wrapped_kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/decorators.py", line 127, in
wrapped
return f(*wrapped_args, **wrapped_kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/decorators.py", line 277, in
wrapper
return f(*nargs, **wrapped_kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreterbase/decorators.py", line 596, in
wrapper
return f(*wrapped_args, **wrapped_kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreter/interpreter.py", line 1774, in
func_dependency
d = df.lookup(kwargs)
^^^^^^^^^^^^^^^^^
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreter/dependencyfallbacks.py", line 355, in
lookup
dep = func(kwargs, func_args, func_kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/interpreter/dependencyfallbacks.py", line 87, in
_do_dependency
dep = dependencies.find_external_dependency(name, self.environment,
kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/dependencies/detect.py", line 124, in
find_external_dependency
d = c()
^^^
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/dependencies/blas_lapack.py", line 524, in __init__
if environment.machines[for_machine].is_darwin() and
self.check_macOS_recent_enough():
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/rob/Development/git Repos/numpy/vendored-
meson/meson/mesonbuild/dependencies/blas_lapack.py", line 529, in
check_macOS_recent_enough
sdk_version = subprocess.run(cmd, capture_output=True, check=True,
text=True).stdout.strip()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/subprocess.py",
line 571, in run
raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['xcrun', '-sdk', 'macosx',
'--show-sdk-version']' returned non-zero exit status 64.
../../numpy/meson.build:119:13: ERROR: Unhandled python exception
This is a Meson bug and should be reported!
ERROR Backend subprocess exited when trying to invoke build_wheel
Grinchs-Mac-Pro-2:numpy rob$
}}}
--
Ticket URL: <https://trac.macports.org/ticket/68545#comment:10>
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