[MacPorts] #68196: Build error for the library "hdf5"
MacPorts
noreply at macports.org
Tue Sep 19 09:52:41 UTC 2023
#68196: Build error for the library "hdf5"
-----------------------+--------------------
Reporter: news24lor | Owner: (none)
Type: defect | Status: new
Priority: Normal | Milestone:
Component: ports | Version: 2.8.1
Keywords: hdf | Port:
-----------------------+--------------------
I was updating all my installed software and updating the library "hdf5"
from version 1.14.1-2 to version 1.14.2 I had several compilation errors
and the library did not update.
This library is important because it is linked to GDAL and consequently
also to QGIS3 and many other software.
The compilation error is this:
{{{
:info:build libtool: compile: /usr/bin/clang -DHAVE_CONFIG_H -I.
-I../fortran/src -I/opt/local/lib/libaec/include -DNDEBUG -UH5_DEBUG_API
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_hdf5/hdf5/work/hdf5-1.14.2-arm64/src/H5FDsubfiling
-I/opt/local/include
-isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk -std=c99
-Wall -Warray-bounds -Wcast-qual -Wconversion -Wdouble-promotion -Wextra
-Wformat=2 -Wframe-larger-than=16384 -Wimplicit-fallthrough -Wnull-
dereference -Wunused-const-variable -Wwrite-strings -Wpedantic -Wvolatile-
register-var -Wno-c++-compat -Wbad-function-cast -Wimplicit-function-
declaration -Wincompatible-pointer-types -Wmissing-declarations -Wpacked
-Wshadow -Wswitch -Wno-error=incompatible-pointer-types-discards-
qualifiers -Wunused-function -Wunused-variable -Wunused-parameter -Wcast-
align -Wformat -Wno-missing-noreturn -O3 -pipe -Os -arch arm64
-isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk -MT
H5Ztrans.lo -MD -MP -MF .deps/H5Ztrans.Tpo -c H5Ztrans.c -fno-common
-DPIC -o .libs/H5Ztrans.o
:info:build libtool: compile: /usr/bin/clang -DHAVE_CONFIG_H -I.
-I../fortran/src -I/opt/local/lib/libaec/include -DNDEBUG -UH5_DEBUG_API
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_hdf5/hdf5/work/hdf5-1.14.2-arm64/src/H5FDsubfiling
-I/opt/local/include
-isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk -std=c99
-Wall -Warray-bounds -Wcast-qual -Wconversion -Wdouble-promotion -Wextra
-Wformat=2 -Wframe-larger-than=16384 -Wimplicit-fallthrough -Wnull-
dereference -Wunused-const-variable -Wwrite-strings -Wpedantic -Wvolatile-
register-var -Wno-c++-compat -Wbad-function-cast -Wimplicit-function-
declaration -Wincompatible-pointer-types -Wmissing-declarations -Wpacked
-Wshadow -Wswitch -Wno-error=incompatible-pointer-types-discards-
qualifiers -Wunused-function -Wunused-variable -Wunused-parameter -Wcast-
align -Wformat -Wno-missing-noreturn -O3 -pipe -Os -arch arm64
-isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk -MT
H5Zszip.lo -MD -MP -MF .deps/H5Zszip.Tpo -c H5Zszip.c -o H5Zszip.o
>/dev/null 2>&1
:info:build libtool: link: /usr/bin/clang -std=c99 -Wall -Warray-bounds
-Wcast-qual -Wconversion -Wdouble-promotion -Wextra -Wformat=2 -Wframe-
larger-than=16384 -Wimplicit-fallthrough -Wnull-dereference -Wunused-
const-variable -Wwrite-strings -Wpedantic -Wvolatile-register-var
-Wno-c++-compat -Wbad-function-cast -Wimplicit-function-declaration
-Wincompatible-pointer-types -Wmissing-declarations -Wpacked -Wshadow
-Wswitch -Wno-error=incompatible-pointer-types-discards-qualifiers
-Wunused-function -Wunused-variable -Wunused-parameter -Wcast-align
-Wformat -Wno-missing-noreturn -O3 -pipe -Os -arch arm64
-isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk
-Wl,-commons -Wl,use_dylibs -Wl,-headerpad_max_install_names -Wl,-rpath
-Wl,/opt/local/lib/libgcc -arch arm64 -Wl,-syslibroot
-Wl,/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk -o H5detect
H5detect.o -L/opt/local/lib/libaec/lib -L/opt/local/lib -lsz -lz -ldl -lm
:info:build libtool: link: /usr/bin/clang -std=c99 -Wall -Warray-bounds
-Wcast-qual -Wconversion -Wdouble-promotion -Wextra -Wformat=2 -Wframe-
larger-than=16384 -Wimplicit-fallthrough -Wnull-dereference -Wunused-
const-variable -Wwrite-strings -Wpedantic -Wvolatile-register-var
-Wno-c++-compat -Wbad-function-cast -Wimplicit-function-declaration
-Wincompatible-pointer-types -Wmissing-declarations -Wpacked -Wshadow
-Wswitch -Wno-error=incompatible-pointer-types-discards-qualifiers
-Wunused-function -Wunused-variable -Wunused-parameter -Wcast-align
-Wformat -Wno-missing-noreturn -O3 -pipe -Os -arch arm64
-isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk
-Wl,-commons -Wl,use_dylibs -Wl,-headerpad_max_install_names -Wl,-rpath
-Wl,/opt/local/lib/libgcc -arch arm64 -Wl,-syslibroot
-Wl,/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk -o
H5make_libsettings H5make_libsettings.o -L/opt/local/lib/libaec/lib
-L/opt/local/lib -lsz -lz -ldl -lm
:info:build ld: unknown options: -commons
:info:build ld: unknown options: -commons
:info:build clang: error: linker command failed with exit code 1 (use -v
to see invocation)
:info:build clang: error: linker command failed with exit code 1 (use -v
to see invocation)
:info:build make[2]: *** [H5make_libsettings] Error 1
:info:build make[2]: *** Waiting for unfinished jobs....
:info:build make[2]: *** [H5detect] Error 1
:info:build libtool: compile: /usr/bin/clang -DHAVE_CONFIG_H -I.
-I../fortran/src -I/opt/local/lib/libaec/include -DNDEBUG -UH5_DEBUG_API
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_hdf5/hdf5/work/hdf5-1.14.2-arm64/src/H5FDsubfiling
-I/opt/local/include
-isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk -std=c99
-Wall -Warray-bounds -Wcast-qual -Wconversion -Wdouble-promotion -Wextra
-Wformat=2 -Wframe-larger-than=16384 -Wimplicit-fallthrough -Wnull-
dereference -Wunused-const-variable -Wwrite-strings -Wpedantic -Wvolatile-
register-var -Wno-c++-compat -Wbad-function-cast -Wimplicit-function-
declaration -Wincompatible-pointer-types -Wmissing-declarations -Wpacked
-Wshadow -Wswitch -Wno-error=incompatible-pointer-types-discards-
qualifiers -Wunused-function -Wunused-variable -Wunused-parameter -Wcast-
align -Wformat -Wno-missing-noreturn -O3 -pipe -Os -arch arm64
-isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk -MT
H5Zscaleoffset.lo -MD -MP -MF .deps/H5Zscaleoffset.Tpo -c H5Zscaleoffset.c
-o H5Zscaleoffset.o >/dev/null 2>&1
:info:build libtool: compile: /usr/bin/clang -DHAVE_CONFIG_H -I.
-I../fortran/src -I/opt/local/lib/libaec/include -DNDEBUG -UH5_DEBUG_API
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_hdf5/hdf5/work/hdf5-1.14.2-arm64/src/H5FDsubfiling
-I/opt/local/include
-isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk -std=c99
-Wall -Warray-bounds -Wcast-qual -Wconversion -Wdouble-promotion -Wextra
-Wformat=2 -Wframe-larger-than=16384 -Wimplicit-fallthrough -Wnull-
dereference -Wunused-const-variable -Wwrite-strings -Wpedantic -Wvolatile-
register-var -Wno-c++-compat -Wbad-function-cast -Wimplicit-function-
declaration -Wincompatible-pointer-types -Wmissing-declarations -Wpacked
-Wshadow -Wswitch -Wno-error=incompatible-pointer-types-discards-
qualifiers -Wunused-function -Wunused-variable -Wunused-parameter -Wcast-
align -Wformat -Wno-missing-noreturn -O3 -pipe -Os -arch arm64
-isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk -MT
H5Ztrans.lo -MD -MP -MF .deps/H5Ztrans.Tpo -c H5Ztrans.c -o H5Ztrans.o
>/dev/null 2>&1
:info:build libtool: compile: /usr/bin/clang -DHAVE_CONFIG_H -I.
-I../fortran/src -I/opt/local/lib/libaec/include -DNDEBUG -UH5_DEBUG_API
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_hdf5/hdf5/work/hdf5-1.14.2-arm64/src/H5FDsubfiling
-I/opt/local/include
-isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk -std=c99
-Wall -Warray-bounds -Wcast-qual -Wconversion -Wdouble-promotion -Wextra
-Wformat=2 -Wframe-larger-than=16384 -Wimplicit-fallthrough -Wnull-
dereference -Wunused-const-variable -Wwrite-strings -Wpedantic -Wvolatile-
register-var -Wno-c++-compat -Wbad-function-cast -Wimplicit-function-
declaration -Wincompatible-pointer-types -Wmissing-declarations -Wpacked
-Wshadow -Wswitch -Wno-error=incompatible-pointer-types-discards-
qualifiers -Wunused-function -Wunused-variable -Wunused-parameter -Wcast-
align -Wformat -Wno-missing-noreturn -O3 -pipe -Os -arch arm64
-isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk -MT
H5Tconv.lo -MD -MP -MF .deps/H5Tconv.Tpo -c H5Tconv.c -o H5Tconv.o
>/dev/null 2>&1
:info:build make[2]: Leaving directory
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_hdf5/hdf5/work/hdf5-1.14.2-arm64/src'
:info:build make[1]: *** [all] Error 2
:info:build make[1]: Leaving directory
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_hdf5/hdf5/work/hdf5-1.14.2-arm64/src'
:info:build make: *** [all-recursive] Error 1
:info:build make: Leaving directory
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_hdf5/hdf5/work/hdf5-1.14.2-arm64'
:info:build Command failed: cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_hdf5/hdf5/work/hdf5-1.14.2-arm64"
&& /usr/bin/make -j10 -w all
:info:build Exit code: 2
:error:build Failed to build hdf5: command execution failed
:debug:build Error code: NONE
:debug:build Backtrace: command execution failed
:debug:build while executing
:debug:build "$procedure $targetname"
:error:build See
/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_hdf5/hdf5/main.log
for details.
}}}
--
Ticket URL: <https://trac.macports.org/ticket/68196>
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