[MacPorts] #69131: mpich-gcc12 @4.1.2_0+fortran: cmake no longer locates MPI_C and MPI_CXX (but still finds MPI_Fortran OK)
MacPorts
noreply at macports.org
Fri Jan 19 00:59:18 UTC 2024
#69131: mpich-gcc12 @4.1.2_0+fortran: cmake no longer locates MPI_C and MPI_CXX
(but still finds MPI_Fortran OK)
--------------------------+--------------------
Reporter: floquet-cxx | Owner: (none)
Type: defect | Status: new
Priority: Normal | Milestone:
Component: ports | Version: 2.8.1
Resolution: | Keywords:
Port: |
--------------------------+--------------------
Old description:
> The application I'm compiling/developing uses C++, C, F77 and MPI. It
> has compiled and run fine for many years, though it's still in
> development. I was recently forced to "upgrade" from Ventura to Sonoma
> (14.2.1) and Xcode15 and now MPI_C and MPI_CXX can't be found by cmake
> (worked fine before the "upgrade"). Problem now happens on both ARM M2
> macs I have. I did a clean reinstall if macports and all the ports I
> use.
>
> I'm not completely sure the issue is with mpich, but it doesn't occur
> with openmpi, so I am assuming it's an mpich port issue as opposed to a
> cmake port issue. Though I'm using gcc12, the same problem occurs with
> gcc13.
>
> Here are the commands I use to install gcc12 and mpich (on both Ventura
> and Sonoma)
>
> {{{
>
> sudo port -N install cmake
> sudo port -N install gcc12
> sudo port -N install mpich-gcc12
> sudo port select --set mpi mpich-gcc12-fortran
>
> }}}
>
> I require the MPI package with cmake for this application. I believe
> this means that MPI_C, MPI_CXX and MPI_Fortran will be required as
> linkers - even though the top-level code is C++, some lower-level
> libraries in my application use C and F77. So here are the errors I now
> get when cmake is run:
>
> {{{
>
> build (master) >$ cmake ..
> -- The C compiler identification is AppleClang 15.0.0.15000100
> -- The CXX compiler identification is AppleClang 15.0.0.15000100
> -- The Fortran compiler identification is GNU 12.3.0
> -- Detecting C compiler ABI info
> -- Detecting C compiler ABI info - done
> -- Check for working C compiler:
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
> - skipped
> -- Detecting C compile features
> -- Detecting C compile features - done
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Check for working CXX compiler:
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
> - skipped
> -- Detecting CXX compile features
> -- Detecting CXX compile features - done
> -- Checking whether Fortran compiler has -isysroot
> -- Checking whether Fortran compiler has -isysroot - yes
> -- Checking whether Fortran compiler supports OSX deployment target flag
> -- Checking whether Fortran compiler supports OSX deployment target flag
> - yes
> -- Detecting Fortran compiler ABI info
> -- Detecting Fortran compiler ABI info - done
> -- Check for working Fortran compiler: /opt/local/bin/gfortran - skipped
> -- Building with Apple Accelerate BLAS and LAPACK.
> -- Building code with standard release optimizations.
> -- Found BISON: /opt/local/bin/bison (found version "3.8.2")
> -- Looking for Fortran sgemm
> -- Looking for Fortran sgemm - found
> -- Found BLAS:
> /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.2.sdk/usr/lib/libblas.tbd
> -- Looking for Fortran cheev
> -- Looking for Fortran cheev - found
> -- Found LAPACK:
> /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.2.sdk/usr/lib/liblapack.tbd;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.2.sdk/usr/lib/libblas.tbd
> -- Could NOT find MPI_C (missing: MPI_C_WORKS)
> -- Could NOT find MPI_CXX (missing: MPI_CXX_WORKS)
> -- Found MPI_Fortran: /opt/local/lib/mpich-gcc12/libmpifort.dylib (found
> version "4.0")
> CMake Error at
> /opt/local/share/cmake-3.24/Modules/FindPackageHandleStandardArgs.cmake:230
> (message):
> Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) (found version
> "4.0")
> Call Stack (most recent call first):
> /opt/local/share/cmake-3.24/Modules/FindPackageHandleStandardArgs.cmake:594
> (_FPHSA_FAILURE_MESSAGE)
> /opt/local/share/cmake-3.24/Modules/FindMPI.cmake:1835
> (find_package_handle_standard_args)
> CMakeLists.txt:100 (find_package)
>
> -- Configuring incomplete, errors occurred!
> See also "/Users/hmb/develop-git/semtex-
> master/build/CMakeFiles/CMakeOutput.log".
> See also "/Users/hmb/develop-git/semtex-
> master/build/CMakeFiles/CMakeError.log".
>
> }}}
>
> Perhaps related: you can see that Apple's C and C++ compilers are
> selected, but GNU's Fortran compiler gets selected. However, this
> combination has worked in the past.
>
> I looks like the cmake MPI package resolver has a conflict with the
> version numbers of libmpicxx and libmpi although they are apparently
> consistent with libmpifort (all 4.0).
>
> Here is a listing of what is in /opt/local/lib/mpich-gcc12:
>
> {{{
>
> build (master) >$ ls /opt/local/lib/mpich-gcc12/
> libfmpich.dylib@ libmpicxx.12.dylib* libopa.dylib@
> libmpi.12.dylib* libmpicxx.a libpmpi.12.dylib*
> libmpi.a libmpicxx.dylib@ libpmpi.a
> libmpi.dylib@ libmpifort.12.dylib* libpmpi.dylib@
> libmpich.dylib@ libmpifort.a pkgconfig/
> libmpichcxx.dylib@ libmpifort.dylib@
> libmpichf90.dylib@ libmpl.dylib@
>
> }}}
New description:
The application I'm compiling/developing uses C++, C, F77 and MPI. It has
compiled and run fine for many years, though it's still in development.
I was recently forced to "upgrade" from Ventura to Sonoma (14.2.1) and
Xcode15 and now MPI_C and MPI_CXX can't be found by cmake (worked fine
before the "upgrade"). Problem now happens on both ARM M2 macs I have. I
did a clean reinstall if macports and all the ports I use.
I'm not completely sure the issue is with mpich, but it doesn't occur with
openmpi, so I am assuming it's an mpich port issue as opposed to a cmake
port issue. Though I'm using gcc12, the same problem occurs with gcc13.
Here are the commands I use to install gcc12 and mpich (on both Ventura
and Sonoma)
{{{
sudo port -N install cmake
sudo port -N install gcc12
sudo port -N install mpich-gcc12
sudo port select --set mpi mpich-gcc12-fortran
}}}
I require the MPI package with cmake for this application. I believe this
means that MPI_C, MPI_CXX and MPI_Fortran will be required as linkers -
even though the top-level code is C++, some lower-level libraries in my
application use C and F77. So here are the errors I now get when cmake is
run:
{{{
build (master) >$ cmake ..
-- The C compiler identification is AppleClang 15.0.0.15000100
-- The CXX compiler identification is AppleClang 15.0.0.15000100
-- The Fortran compiler identification is GNU 12.3.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
- skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
- skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Checking whether Fortran compiler has -isysroot
-- Checking whether Fortran compiler has -isysroot - yes
-- Checking whether Fortran compiler supports OSX deployment target flag
-- Checking whether Fortran compiler supports OSX deployment target flag -
yes
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /opt/local/bin/gfortran - skipped
-- Building with Apple Accelerate BLAS and LAPACK.
-- Building code with standard release optimizations.
-- Found BISON: /opt/local/bin/bison (found version "3.8.2")
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - found
-- Found BLAS:
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.2.sdk/usr/lib/libblas.tbd
-- Looking for Fortran cheev
-- Looking for Fortran cheev - found
-- Found LAPACK:
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.2.sdk/usr/lib/liblapack.tbd;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.2.sdk/usr/lib/libblas.tbd
-- Could NOT find MPI_C (missing: MPI_C_WORKS)
-- Could NOT find MPI_CXX (missing: MPI_CXX_WORKS)
-- Found MPI_Fortran: /opt/local/lib/mpich-gcc12/libmpifort.dylib (found
version "4.0")
CMake Error at
/opt/local/share/cmake-3.24/Modules/FindPackageHandleStandardArgs.cmake:230
(message):
Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) (found version
"4.0")
Call Stack (most recent call first):
/opt/local/share/cmake-3.24/Modules/FindPackageHandleStandardArgs.cmake:594
(_FPHSA_FAILURE_MESSAGE)
/opt/local/share/cmake-3.24/Modules/FindMPI.cmake:1835
(find_package_handle_standard_args)
CMakeLists.txt:100 (find_package)
-- Configuring incomplete, errors occurred!
See also "/Users/hmb/develop-git/semtex-
master/build/CMakeFiles/CMakeOutput.log".
See also "/Users/hmb/develop-git/semtex-
master/build/CMakeFiles/CMakeError.log".
}}}
Perhaps related: you can see that Apple's C and C++ compilers are
selected, but GNU's Fortran compiler gets selected. However, this
combination has worked in the past.
I looks like the cmake MPI package resolver has a conflict with the
version numbers of libmpicxx and libmpi although they are apparently
consistent with libmpifort (all 4.0).
Here is a listing of what is in /opt/local/lib/mpich-gcc12:
{{{
build (master) >$ ls /opt/local/lib/mpich-gcc12/
libfmpich.dylib@ libmpicxx.12.dylib* libopa.dylib@
libmpi.12.dylib* libmpicxx.a libpmpi.12.dylib*
libmpi.a libmpicxx.dylib@ libpmpi.a
libmpi.dylib@ libmpifort.12.dylib* libpmpi.dylib@
libmpich.dylib@ libmpifort.a pkgconfig/
libmpichcxx.dylib@ libmpifort.dylib@
libmpichf90.dylib@ libmpl.dylib@
}}}
--
Comment (by floquet-cxx):
I find that if I force the use of Macports gcc and g++ compilers on the
command line, like so:
{{{
cmake -DCMAKE_C_COMPILER=/opt/local/bin/gcc
-DCMAKE_CXX_COMPILER=/opt/local/bin/g++ ..
}}}
then the cmake errors go away, and compilation completes (instead, mpirun
now fails!). However, the original code (both with/without Apple C and C++
compilers) still works fine on pre-Sonoma OS X versions.
--
Ticket URL: <https://trac.macports.org/ticket/69131#comment:1>
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