[MacPorts] #69207: hdf5 package installs but h5fc fails with ld: library not found for -lsz
MacPorts
noreply at macports.org
Sat Jan 27 12:08:02 UTC 2024
#69207: hdf5 package installs but h5fc fails with ld: library not found for -lsz
-----------------------------+--------------------
Reporter: Michael-P-Allen | Owner: (none)
Type: defect | Status: new
Priority: Normal | Milestone:
Component: ports | Version:
Keywords: | Port:
-----------------------------+--------------------
Installing with `sudo port install hdf5` succeeds (log file attached for
reference). However the Fortran wrapper script `h5fc` provided by the
package fails:
{{{
h5fc hello.f90
ld: library not found for -lsz
collect2: error: ld returned 1 exit status
}}}
A workaround is to include `-L/opt/local/lib/libaec/lib` on the `h5fc`
command line, but the wrapper script should handle this. The command line
actually invoked by `h5fc` is
{{{
h5fc -show
/opt/local/bin/gfortran-mp-13 -pipe -Os -m64 -I/opt/local/include
-L/opt/local/lib /opt/local/lib/libhdf5hl_fortran.a
/opt/local/lib/libhdf5_hl.a /opt/local/lib/libhdf5_fortran.a
/opt/local/lib/libhdf5.a -Wl,-headerpad_max_install_names
-Wl,-syslibroot,/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk -lsz
-lz -ldl -lm
}}}
and the `sz` library located in `opt/local/lib/libaec/lib` is not found.
This is not the case for `h5cc` and `h5c++` wrapper scripts, for which the
path to the library is given explicitly, as shown by
{{{
h5cc -show
/usr/bin/clang
-isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk -pipe -Os
-isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk
-L/opt/local/lib /opt/local/lib/libhdf5_hl.a /opt/local/lib/libhdf5.a
-Wl,-headerpad_max_install_names
-Wl,-syslibroot,/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk
/opt/local/lib/libaec/lib/libsz.dylib /opt/local/lib/libz.dylib -ldl -lm
}}}
There appears to be something in the `post-destroot` section of the
Portfile which sets up `/opt/local/lib/libaec/lib/libsz.dylib` for `h5c++`
and `h5cc`, but nothing similar for `h5fc`. However I'm not a Portfile
expert.
MacOS Sonoma 14.3, Xcode 15.2, CLT 15.1.0.0.1.1700200546, Intel Mac Mini.
--
Ticket URL: <https://trac.macports.org/ticket/69207>
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