[MacPorts] #69211: Macports 2.9.0 has broken port test for R portgroup

MacPorts noreply at macports.org
Sun Jan 28 00:26:49 UTC 2024 

#69211: Macports 2.9.0 has broken port test for R portgroup
--------------------------+--------------------
 Reporter:  barracuda156  |      Owner:  (none)
     Type:  defect        |     Status:  new
 Priority:  Normal        |  Milestone:
Component:  base          |    Version:  2.9.0
 Keywords:                |       Port:  R
--------------------------+--------------------
 This is an example, but no R port works now for `port test`.

 {{{
 36-246% sudo port -v -n test R-ess
 Warning: configured user/group macports does not exist, will build as root
 Portfile for R-ess changed since last build; discarding previous state.
 --->  Computing dependencies for R-ess.
 --->  Fetching distfiles for R-ess
 --->  Verifying checksums for R-ess
 --->  Checksumming ess_1.1.2.tar.gz
 --->  Extracting R-ess
 --->  Extracting ess_1.1.2.tar.gz
 Executing:  cd "/opt/local/var/macports/build
 /_opt_PPCSnowLeopardPorts_R_R-ess/R-ess/work" && /usr/bin/gzip -dc
 '/opt/local/var/macports/distfiles/R-ess/ess_1.1.2.tar.gz' |
 /usr/bin/gnutar --no-same-owner -xf -
 --->  Configuring R-ess
 Executing:  cd "/opt/local/var/macports/build
 /_opt_PPCSnowLeopardPorts_R_R-ess/R-ess/work/ess" && /opt/local/bin/R CMD
 build . --no-manual --no-build-vignettes --keep-empty-dirs
 * checking for file ‘./DESCRIPTION’ ... OK
 * preparing ‘ess’:
 * checking DESCRIPTION meta-information ... OK
 * cleaning src
 * checking for LF line-endings in source and make files and shell scripts
 * checking for empty or unneeded directories
 * building ‘ess_1.1.2.tar.gz’

 --->  Building R-ess
 --->  Staging R-ess into destroot
 . changed
         gid expected 0 found 80 modified
 ./usr missing (created)
 . missing (directory not created: File exists)
 ./Applications missing (created)
 ./Developer missing (created)
 ./Library missing (created)
 . changed
         gid expected 80 found 0 modified
 ./bin missing (created)
 ./etc missing (created)
 ./include missing (created)
 ./lib missing (created)
 ./lib/pkgconfig missing (created)
 ./libexec missing (created)
 ./sbin missing (created)
 ./share missing (created)
 ./share/doc missing (created)
 ./share/info missing (created)
 ./share/man missing (created)
 ./share/man/cat1 missing (created)
 ./share/man/cat2 missing (created)
 ./share/man/cat3 missing (created)
 ./share/man/cat4 missing (created)
 ./share/man/cat5 missing (created)
 ./share/man/cat6 missing (created)
 ./share/man/cat7 missing (created)
 ./share/man/cat8 missing (created)
 ./share/man/cat9 missing (created)
 ./share/man/catl missing (created)
 ./share/man/catn missing (created)
 ./share/man/man1 missing (created)
 ./share/man/man2 missing (created)
 ./share/man/man3 missing (created)
 ./share/man/man4 missing (created)
 ./share/man/man5 missing (created)
 ./share/man/man6 missing (created)
 ./share/man/man7 missing (created)
 ./share/man/man8 missing (created)
 ./share/man/man9 missing (created)
 ./share/man/manl missing (created)
 ./share/man/mann missing (created)
 ./share/nls missing (created)
 ./share/nls/C missing (created)
 ./share/nls/af_ZA.ISO8859-1 missing (created)
 ./share/nls/af_ZA.ISO8859-15 missing (created)
 ./share/nls/bg_BG.CP1251 missing (created)
 ./share/nls/cs_CZ.ISO8859-2 missing (created)
 ./share/nls/da_DK.ISO8859-1 missing (created)
 ./share/nls/da_DK.ISO8859-15 missing (created)
 ./share/nls/de_AT.ISO8859-1 missing (created)
 ./share/nls/de_AT.ISO8859-15 missing (created)
 ./share/nls/de_CH.ISO8859-1 missing (created)
 ./share/nls/de_CH.ISO8859-15 missing (created)
 ./share/nls/de_DE.ISO8859-1 missing (created)
 ./share/nls/de_DE.ISO8859-15 missing (created)
 ./share/nls/el_GR.ISO8859-7 missing (created)
 ./share/nls/en_AU.ISO8859-1 missing (created)
 ./share/nls/en_AU.ISO8859-15 missing (created)
 ./share/nls/en_AU.US-ASCII missing (created)
 ./share/nls/en_CA.ISO8859-1 missing (created)
 ./share/nls/en_CA.ISO8859-15 missing (created)
 ./share/nls/en_CA.US-ASCII missing (created)
 ./share/nls/en_GB.ISO8859-1 missing (created)
 ./share/nls/en_GB.ISO8859-15 missing (created)
 ./share/nls/en_GB.US-ASCII missing (created)
 ./share/nls/en_NZ.ISO8859-1 missing (created)
 ./share/nls/en_NZ.ISO8859-15 missing (created)
 ./share/nls/en_NZ.US-ASCII missing (created)
 ./share/nls/en_US.ISO8859-1 missing (created)
 ./share/nls/en_US.ISO8859-15 missing (created)
 ./share/nls/es_ES.ISO8859-1 missing (created)
 ./share/nls/es_ES.ISO8859-15 missing (created)
 ./share/nls/et_EE.ISO8859-15 missing (created)
 ./share/nls/fi_FI.ISO8859-1 missing (created)
 ./share/nls/fi_FI.ISO8859-15 missing (created)
 ./share/nls/fr_BE.ISO8859-1 missing (created)
 ./share/nls/fr_BE.ISO8859-15 missing (created)
 ./share/nls/fr_CA.ISO8859-1 missing (created)
 ./share/nls/fr_CA.ISO8859-15 missing (created)
 ./share/nls/fr_CH.ISO8859-1 missing (created)
 ./share/nls/fr_CH.ISO8859-15 missing (created)
 ./share/nls/fr_FR.ISO8859-1 missing (created)
 ./share/nls/fr_FR.ISO8859-15 missing (created)
 ./share/nls/hi_IN.ISCII-DEV missing (created)
 ./share/nls/hr_HR.ISO8859-2 missing (created)
 ./share/nls/hu_HU.ISO8859-2 missing (created)
 ./share/nls/is_IS.ISO8859-1 missing (created)
 ./share/nls/is_IS.ISO8859-15 missing (created)
 ./share/nls/it_CH.ISO8859-1 missing (created)
 ./share/nls/it_CH.ISO8859-15 missing (created)
 ./share/nls/it_IT.ISO8859-1 missing (created)
 ./share/nls/it_IT.ISO8859-15 missing (created)
 ./share/nls/ja_JP.SJIS missing (created)
 ./share/nls/ja_JP.eucJP missing (created)
 ./share/nls/ko_KR.eucKR missing (created)
 ./share/nls/la_LN.ISO8859-1 missing (created)
 ./share/nls/la_LN.ISO8859-15 missing (created)
 ./share/nls/la_LN.ISO8859-2 missing (created)
 ./share/nls/la_LN.ISO8859-4 missing (created)
 ./share/nls/la_LN.US-ASCII missing (created)
 ./share/nls/lt_LT.ISO8859-4 missing (created)
 ./share/nls/nl_BE.ISO8859-1 missing (created)
 ./share/nls/nl_BE.ISO8859-15 missing (created)
 ./share/nls/nl_NL.ISO8859-1 missing (created)
 ./share/nls/nl_NL.ISO8859-15 missing (created)
 ./share/nls/no_NO.ISO8859-1 missing (created)
 ./share/nls/no_NO.ISO8859-15 missing (created)
 ./share/nls/pl_PL.ISO8859-2 missing (created)
 ./share/nls/pt_BR.ISO8859-1 missing (created)
 ./share/nls/pt_PT.ISO8859-1 missing (created)
 ./share/nls/pt_PT.ISO8859-15 missing (created)
 ./share/nls/ro_RO.ISO8859-2 missing (created)
 ./share/nls/ru_RU.CP866 missing (created)
 ./share/nls/ru_RU.ISO8859-5 missing (created)
 ./share/nls/ru_RU.KOI8-R missing (created)
 ./share/nls/sk_SK.ISO8859-2 missing (created)
 ./share/nls/sl_SI.ISO8859-2 missing (created)
 ./share/nls/sv_SE.ISO8859-1 missing (created)
 ./share/nls/sv_SE.ISO8859-15 missing (created)
 ./share/nls/tr_TR.ISO8859-9 missing (created)
 ./share/nls/uk_UA.ISO8859-5 missing (created)
 ./share/nls/uk_UA.KOI8-U missing (created)
 ./share/nls/zh_CN.eucCN missing (created)
 ./share/nls/zh_TW.Big5 missing (created)
 ./share/skel missing (created)
 ./var missing (created)
 ./var/cache missing (created)
 ./var/db missing (created)
 ./var/log missing (created)
 ./var/run missing (created)
 ./var/spool missing (created)
 ./www missing (created)
 xinstall: mkdir /opt/local/var/macports/build
 /_opt_PPCSnowLeopardPorts_R_R-
 ess/R-ess/work/destroot/opt/local/Library/Frameworks/R.framework
 xinstall: mkdir /opt/local/var/macports/build
 /_opt_PPCSnowLeopardPorts_R_R-
 ess/R-ess/work/destroot/opt/local/Library/Frameworks/R.framework/Versions
 xinstall: mkdir /opt/local/var/macports/build
 /_opt_PPCSnowLeopardPorts_R_R-
 ess/R-ess/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3
 xinstall: mkdir /opt/local/var/macports/build
 /_opt_PPCSnowLeopardPorts_R_R-
 ess/R-ess/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources
 xinstall: mkdir /opt/local/var/macports/build
 /_opt_PPCSnowLeopardPorts_R_R-
 ess/R-ess/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library
 Executing:  cd "/opt/local/var/macports/build
 /_opt_PPCSnowLeopardPorts_R_R-ess/R-ess/work/ess" && /opt/local/bin/R CMD
 INSTALL . --library=/opt/local/var/macports/build
 /_opt_PPCSnowLeopardPorts_R_R-
 ess/R-ess/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library
 --install-tests
 * installing *source* package ‘ess’ ...
 ** package ‘ess’ successfully unpacked and MD5 sums checked
 ** using staged installation
 ** libs
 using C++ compiler: ‘g++-mp-13 (MacPorts gcc13 13.2.0_4+stdlib_flag)
 13.2.0’
 using C++11
 Warning in system2("xcrun", "--show-sdk-path", TRUE, TRUE) :
   running command ''xcrun' --show-sdk-path 2>&1' had status 64
 using SDK: ‘NA’‘NA’‘NA’‘NA’‘NA’‘NA’
 /opt/local/bin/g++-mp-13 -std=gnu++11
 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library/Rcpp/include'
 -isystem/opt/local/include/LegacySupport -I/opt/local/include    -fPIC
 -pipe -Os -arch ppc  -c RcppExports.cpp -o RcppExports.o
 /opt/local/bin/g++-mp-13 -std=gnu++11
 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library/Rcpp/include'
 -isystem/opt/local/include/LegacySupport -I/opt/local/include    -fPIC
 -pipe -Os -arch ppc  -c dfs.cpp -o dfs.o
 /opt/local/bin/g++-mp-13 -std=gnu++11
 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library/Rcpp/include'
 -isystem/opt/local/include/LegacySupport -I/opt/local/include    -fPIC
 -pipe -Os -arch ppc  -c rip.cpp -o rip.o
 /opt/local/bin/g++-mp-13 -std=gnu++11
 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library/Rcpp/include'
 -isystem/opt/local/include/LegacySupport -I/opt/local/include    -fPIC
 -pipe -Os -arch ppc  -c set_ops.cpp -o set_ops.o
 /opt/local/bin/g++-mp-13 -std=gnu++11 -dynamiclib
 -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module
 -multiply_defined suppress
 -L/opt/local/Library/Frameworks/R.framework/Resources/lib
 -Wl,-headerpad_max_install_names -L/opt/local/lib -lMacportsLegacySupport
 -Wl,-rpath,/opt/local/lib/libgcc -arch ppc -o ess.so RcppExports.o dfs.o
 rip.o set_ops.o -F/opt/local/Library/Frameworks/R.framework/.. -framework
 R -Wl,-framework -Wl,CoreFoundation
 installing to /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_R_R-
 ess/R-ess/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library
 /00LOCK-ess/00new/ess/libs
 ** R
 ** data
 *** moving datasets to lazyload DB
 ** inst
 ** tests
 ** byte-compile and prepare package for lazy loading
 ** help
 *** installing help indices
 *** copying figures
 ** building package indices
 ** testing if installed package can be loaded from temporary location
 ** checking absolute paths in shared objects and dynamic libraries
 ** testing if installed package can be loaded from final location
 ** testing if installed package keeps a record of temporary installation
 path
 * DONE (ess)
 --->  Testing R-ess
 Warning: ‘./ess_1.1.2.tar.gz’ is neither a file nor directory, skipping
 }}}

 This should be fixed, it is quite upsetting to have 4k+ ports broken for
 testing :)

 P. S. Ryan, maybe you could suggest something? I know I am the maintainer
 for R PG stuff, but this is definitely some change in the base.

-- 
Ticket URL: <https://trac.macports.org/ticket/69211>
MacPorts <https://www.macports.org/>
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