[MacPorts] #69938: Error on loading h5py

MacPorts noreply at macports.org
Wed May 8 10:56:57 UTC 2024


#69938: Error on loading h5py
-----------------------------+---------------------
 Reporter:  Michael-P-Allen  |      Owner:  (none)
     Type:  defect           |     Status:  new
 Priority:  Normal           |  Milestone:
Component:  ports            |    Version:
 Keywords:                   |       Port:  py-h5py
-----------------------------+---------------------
 Following the upgrade to hdf5 @1.14.4.2_1+cxx+fortran+gfortran+hl I get an
 error message in Python when I load h5py. I took care to uninstall and
 reinstall the py-h5py and py312-h5py ports, so now I have:
 {{{
 $ port installed | grep hdf
   hdf5 @1.14.3_4+cxx+fortran+gfortran+hl
   hdf5 @1.14.4.2_0+cxx+fortran+gfortran+hl
   hdf5 @1.14.4.2_1+cxx+fortran+gfortran+hl (active)
 $ port installed | grep h5
   py-h5py @3.11.0_1 (active)
   py312-h5py @3.11.0_1 (active)
 }}}
 The error I get is:
 {{{
 $ python
 Python 3.12.3 (main, Apr 12 2024, 20:23:48) [Clang 15.0.0
 (clang-1500.1.0.2.5)] on darwin
 Type "help", "copyright", "credits" or "license" for more information.
 >>> import h5py
 Traceback (most recent call last):
   File "<stdin>", line 1, in <module>
   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12
 /site-packages/h5py/__init__.py", line 45, in <module>
     from ._conv import register_converters as _register_converters, \
   File "h5py/_conv.pyx", line 1, in init h5py._conv
   File "h5py/h5r.pyx", line 1, in init h5py.h5r
   File "h5py/h5p.pyx", line 1, in init h5py.h5p
   File "h5py/h5t.pyx", line 235, in init h5py.h5t
   File "h5py/h5t.pyx", line 80, in h5py.h5t.lockid
   File "h5py/h5t.pyx", line 49, in h5py.h5t.typewrap
 ValueError: Not a datatype (not a datatype)
 }}}

 The error message goes away if I do `sudo port activate hdf5
 @1.14.4.2_0+cxx+fortran+gfortran+hl` and then run python, so it must be
 associated with the patch introduced in hdf5 in #69861. (Also h5py worked
 fine with the previous version hdf5 @1.14.3_4+cxx+fortran+gfortran+hl).
 However, it seemed best to open a new ticket. I am running with Xcode
 v15.3, Sonoma 14.4.1 on an Intel-based Mac mini.

-- 
Ticket URL: <https://trac.macports.org/ticket/69938>
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