[MacPorts] #69938: Error on loading h5py
MacPorts
noreply at macports.org
Wed May 8 10:56:57 UTC 2024
#69938: Error on loading h5py
-----------------------------+---------------------
Reporter: Michael-P-Allen | Owner: (none)
Type: defect | Status: new
Priority: Normal | Milestone:
Component: ports | Version:
Keywords: | Port: py-h5py
-----------------------------+---------------------
Following the upgrade to hdf5 @1.14.4.2_1+cxx+fortran+gfortran+hl I get an
error message in Python when I load h5py. I took care to uninstall and
reinstall the py-h5py and py312-h5py ports, so now I have:
{{{
$ port installed | grep hdf
hdf5 @1.14.3_4+cxx+fortran+gfortran+hl
hdf5 @1.14.4.2_0+cxx+fortran+gfortran+hl
hdf5 @1.14.4.2_1+cxx+fortran+gfortran+hl (active)
$ port installed | grep h5
py-h5py @3.11.0_1 (active)
py312-h5py @3.11.0_1 (active)
}}}
The error I get is:
{{{
$ python
Python 3.12.3 (main, Apr 12 2024, 20:23:48) [Clang 15.0.0
(clang-1500.1.0.2.5)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import h5py
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File
"/opt/local/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12
/site-packages/h5py/__init__.py", line 45, in <module>
from ._conv import register_converters as _register_converters, \
File "h5py/_conv.pyx", line 1, in init h5py._conv
File "h5py/h5r.pyx", line 1, in init h5py.h5r
File "h5py/h5p.pyx", line 1, in init h5py.h5p
File "h5py/h5t.pyx", line 235, in init h5py.h5t
File "h5py/h5t.pyx", line 80, in h5py.h5t.lockid
File "h5py/h5t.pyx", line 49, in h5py.h5t.typewrap
ValueError: Not a datatype (not a datatype)
}}}
The error message goes away if I do `sudo port activate hdf5
@1.14.4.2_0+cxx+fortran+gfortran+hl` and then run python, so it must be
associated with the patch introduced in hdf5 in #69861. (Also h5py worked
fine with the previous version hdf5 @1.14.3_4+cxx+fortran+gfortran+hl).
However, it seemed best to open a new ticket. I am running with Xcode
v15.3, Sonoma 14.4.1 on an Intel-based Mac mini.
--
Ticket URL: <https://trac.macports.org/ticket/69938>
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