[MacPorts] #71347: py39-gcd port cannot be installed on OSX Sequoia 15.1 (24B2083)

[MacPorts]

#71347: py39-gcd port cannot be installed on OSX Sequoia 15.1 (24B2083)
-------------------------------------------------+-------------------------
 Reporter:  ungur                                |      Owner:  (none)
     Type:  defect                               |     Status:  new
 Priority:  Normal                               |  Milestone:
Component:  ports                                |    Version:  2.10.4
 Keywords:  GSD (General Simulation Data),       |       Port:  py39-gsd
  python, science                                |
-------------------------------------------------+-------------------------
 I encountered the following issue when trying to install
 "py39-MDAnalysis" port.


 {{{
 liviuungur at Livius-MacBook-Pro Programs % sudo port install py39-MDAnalysis
 @2.0.0
 --->  Computing dependencies for py39-MDAnalysis
 The following dependencies will be installed:
  py39-gsd
  py39-joblib
  py39-mmtf-python
  py39-msgpack
  py39-networkx
  py39-threadpoolctl
  py39-tqdm
 Continue? [Y/n]: y
 --->  Fetching archive for py39-gsd
 --->  Attempting to fetch py39-gsd-2.5.0_0.darwin_24.arm64.tbz2 from
 https://packages.macports.org/py39-gsd
 --->  Attempting to fetch py39-gsd-2.5.0_0.darwin_24.arm64.tbz2 from
 https://pek.cn.packages.macports.org/macports/packages/py39-gsd
 --->  Attempting to fetch py39-gsd-2.5.0_0.darwin_24.arm64.tbz2 from
 https://kmq.jp.packages.macports.org/py39-gsd
 --->  Fetching distfiles for py39-gsd
 --->  Verifying checksums for py39-gsd
 --->  Extracting py39-gsd
 --->  Configuring py39-gsd
 --->  Building py39-gsd
 Error: Failed to build py39-gsd: command execution failed
 Error: See
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_python_py-gsd/py39-gsd/main.log for
 details.
 Error: Follow https://guide.macports.org/#project.tickets if you believe
 there is a bug.
 Error: Processing of port py39-MDAnalysis failed
 }}}

 I clean the failed port and try again:

 {{{
 liviuungur at Livius-MacBook-Pro Programs % sudo port clean py39-gsd
 --->  Cleaning py39-gsd
 liviuungur at Livius-MacBook-Pro Programs % sudo port install py39-gsd
 --->  Computing dependencies for py39-gsd
 --->  Fetching archive for py39-gsd
 --->  Attempting to fetch py39-gsd-2.5.0_0.darwin_24.arm64.tbz2 from
 https://packages.macports.org/py39-gsd
 --->  Attempting to fetch py39-gsd-2.5.0_0.darwin_24.arm64.tbz2 from
 https://pek.cn.packages.macports.org/macports/packages/py39-gsd
 --->  Attempting to fetch py39-gsd-2.5.0_0.darwin_24.arm64.tbz2 from
 https://kmq.jp.packages.macports.org/py39-gsd
 --->  Fetching distfiles for py39-gsd
 --->  Verifying checksums for py39-gsd
 --->  Extracting py39-gsd
 --->  Configuring py39-gsd
 --->  Building py39-gsd
 Error: Failed to build py39-gsd: command execution failed
 Error: See
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_python_py-gsd/py39-gsd/main.log for
 details.
 Error: Follow https://guide.macports.org/#project.tickets if you believe
 there is a bug.
 Error: Processing of port py39-gsd failed
 liviuungur at Livius-MacBook-Pro Programs %
 }}}




 {{{
 py39-gsd @2.5.0 (python, science)
 Variants:             universal

 Description:          GSD (General Simulation Data) is a file format
 specification and a library to read and write it. The package also
 contains a python module that reads and writes hoomd schema gsd files with
                       an easy to use syntax.
 Homepage:             https://gsd.readthedocs.io/

 Build Dependencies:   py39-cython, py39-build, py39-installer,
 py39-setuptools, py39-wheel
 Library Dependencies: py39-numpy, python39
 Test Dependencies:    py39-pytest
 Platforms:            darwin
 License:              BSD
 Maintainers:          Email: giovanni.bussi at gmail.com, GitHub:
 GiovanniBussi
                       Policy: openmaintainer
 }}}

 All dependencies for py39-gsd port were installed successfully.

-- 
Ticket URL: <https://trac.macports.org/ticket/71347>
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