[MacPorts] #72458: bali-phy destroot fails: IsADirectoryError: [Errno 21] Is a directory
MacPorts
noreply at macports.org
Fri May 9 16:28:15 UTC 2025
#72458: bali-phy destroot fails: IsADirectoryError: [Errno 21] Is a directory
--------------------------+----------------------
Reporter: barracuda156 | Owner: (none)
Type: defect | Status: new
Priority: Normal | Milestone:
Component: ports | Version: 2.10.7
Keywords: | Port: bali-phy
--------------------------+----------------------
{{{
Executing: cd "/opt/local/var/macports/build
/_opt_local_ppcports_science_bali-phy/bali-phy/work/build" &&
/opt/local/bin/meson install
ninja: Entering directory `/opt/local/var/macports/build
/_opt_local_ppcports_science_bali-phy/bali-phy/work/build'
[1/4] Generating src/git-version.h with a custom command
Installing subdir /opt/local/var/macports/build
/_opt_local_ppcports_science_bali-phy/bali-phy/work/BAli-Phy-3.6.1/haskell
to /opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy
/bali-phy/work/destroot/opt/local/lib/bali-phy/haskell
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/IModel.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/MCMC.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Parameters.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Parse.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/PopGen.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Prelude.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Probability.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Range.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/SMC.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/SModel.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Tree.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/BAliPhy/ATModel.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/BAliPhy
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/BAliPhy/ATModel/DataPartition.hs
to /opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy
/bali-phy/work/destroot/opt/local/lib/bali-phy/haskell/BAliPhy/ATModel
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Bio/Alignment.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Bio
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Bio/Alphabet.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Bio
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Bio/Sequence.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Bio
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Bio/Alignment/Matrix.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Bio/Alignment
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Bio/Alignment/Pairwise.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Bio/Alignment
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Compiler/Base.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Compiler
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Compiler/Enum.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Compiler
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Compiler/IO.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Compiler
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Compiler/Num.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Compiler
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Compiler/Real.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Compiler
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Compiler/ST.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Compiler
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Control/DeepSeq.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Control
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Control/Monad.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Control
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Data/Array.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Data
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Data/BitVector.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Data
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Data/Bool.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Data
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Data/Char.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Data
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Data/Either.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Data
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Data/Eq.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Data
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Data/Function.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Data
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Data/Ix.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Data
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Data/JSON.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Data
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Data/List.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Data
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Data/Map.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Data
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Data/Matrix.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Data
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Data/Maybe.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Data
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Data/Ord.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Data
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Data/ReadFile.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Data
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Data/Set.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Data
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Data/Text.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Data
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Data/Tuple.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Data
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Foreign/Introspection.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Foreign
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Foreign/Pair.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Foreign
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Foreign/String.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Foreign
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Foreign/Vector.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Foreign
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Probability/Random.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Probability
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-
Phy-3.6.1/haskell/Probability/Distribution/Bernoulli.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Probability/Distribution
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Probability/Distribution/Beta.hs
to /opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy
/bali-phy/work/destroot/opt/local/lib/bali-
phy/haskell/Probability/Distribution
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-
Phy-3.6.1/haskell/Probability/Distribution/Binomial.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Probability/Distribution
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-
Phy-3.6.1/haskell/Probability/Distribution/Categorical.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Probability/Distribution
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-
Phy-3.6.1/haskell/Probability/Distribution/Cauchy.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Probability/Distribution
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-
Phy-3.6.1/haskell/Probability/Distribution/Dirichlet.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Probability/Distribution
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-
Phy-3.6.1/haskell/Probability/Distribution/DirichletProcess.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Probability/Distribution
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-
Phy-3.6.1/haskell/Probability/Distribution/Discrete.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Probability/Distribution
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-
Phy-3.6.1/haskell/Probability/Distribution/Exponential.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Probability/Distribution
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-
Phy-3.6.1/haskell/Probability/Distribution/ExpTransform.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Probability/Distribution
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-
Phy-3.6.1/haskell/Probability/Distribution/FakeDist.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Probability/Distribution
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Probability/Distribution/Gamma.hs
to /opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy
/bali-phy/work/destroot/opt/local/lib/bali-
phy/haskell/Probability/Distribution
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-
Phy-3.6.1/haskell/Probability/Distribution/Geometric.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Probability/Distribution
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-
Phy-3.6.1/haskell/Probability/Distribution/Laplace.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Probability/Distribution
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Probability/Distribution/List.hs
to /opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy
/bali-phy/work/destroot/opt/local/lib/bali-
phy/haskell/Probability/Distribution
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-
Phy-3.6.1/haskell/Probability/Distribution/Mixture.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Probability/Distribution
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-
Phy-3.6.1/haskell/Probability/Distribution/Normal.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Probability/Distribution
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-
Phy-3.6.1/haskell/Probability/Distribution/Poisson.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Probability/Distribution
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-
Phy-3.6.1/haskell/Probability/Distribution/RandomAlignment.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Probability/Distribution
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Probability/Distribution/Tree.hs
to /opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy
/bali-phy/work/destroot/opt/local/lib/bali-
phy/haskell/Probability/Distribution
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-
Phy-3.6.1/haskell/Probability/Distribution/Uniform.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Probability/Distribution
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/SModel/Codons.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/SModel
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/SModel/Doublets.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/SModel
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/SModel/Frequency.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/SModel
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/SModel/Likelihood.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/SModel
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/SModel/Nucleotides.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/SModel
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/SModel/ReversibleMarkov.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/SModel
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/System/Environment.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/System
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/haskell/Tree/Newick.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/haskell/Tree
Installing subdir /opt/local/var/macports/build
/_opt_local_ppcports_science_bali-phy/bali-phy/work/BAli-
Phy-3.6.1/bindings to /opt/local/var/macports/build
/_opt_local_ppcports_science_bali-phy/bali-phy/work/destroot/opt/local/lib
/bali-phy/bindings
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/distributions/bernoulli.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/distributions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/distributions/beta.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/distributions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/distributions/binomial.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/distributions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/distributions/cauchy.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/distributions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/distributions/exponential.json
to /opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy
/bali-phy/work/destroot/opt/local/lib/bali-phy/bindings/distributions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/distributions/gamma.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/distributions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/distributions/geometric.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/distributions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/distributions/iid.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/distributions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/distributions/laplace.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/distributions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/distributions/log_gamma.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/distributions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/distributions/log_laplace.json
to /opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy
/bali-phy/work/destroot/opt/local/lib/bali-phy/bindings/distributions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/distributions/log_normal.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/distributions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/distributions/normal.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/distributions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/distributions/poisson.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/distributions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-
Phy-3.6.1/bindings/distributions/shifted_exponential.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/distributions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/distributions/shifted_gamma.json
to /opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy
/bali-phy/work/destroot/opt/local/lib/bali-phy/bindings/distributions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-
Phy-3.6.1/bindings/distributions/symmetric_dirichlet.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/distributions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-
Phy-3.6.1/bindings/distributions/symmetric_dirichlet_on.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/distributions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/distributions/uniform.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/distributions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/distributions/uniform_int.json
to /opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy
/bali-phy/work/destroot/opt/local/lib/bali-phy/bindings/distributions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/aa.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/add.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/codons.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/cos.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
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phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/div.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/dna.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
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phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/exp.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/getAminoAcids.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/getNucleotides.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
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phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/intToDouble.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
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phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/length.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/letter_pairs.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
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phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/letters.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
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phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/log.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
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phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/map.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
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phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/mul.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
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phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/num_branches.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
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phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/quantile.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
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phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/replicate.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
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phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/rna.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
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phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/sin.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
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phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/sqrt.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/standard_code.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/sub.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/take.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/tan.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-
Phy-3.6.1/bindings/functions/uniform_discretize.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/unit_mixture.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/zip.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/zipWith.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/functions
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/constructors/Cons.json
to /opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy
/bali-phy/work/destroot/opt/local/lib/bali-
phy/bindings/functions/constructors
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/functions/constructors/Nil.json
to /opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy
/bali-phy/work/destroot/opt/local/lib/bali-
phy/bindings/functions/constructors
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/branch_site.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/density.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/dNdS.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/empirical.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/equ.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/f.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/f1x4.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/f3x4.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/f61.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/f81.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/fe.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/fMutSel.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/fMutSel0.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/get_q.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/gtr.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/gtr_sym.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/gwF.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/gy94.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/gy94_ext.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/hky85.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/hky85_sym.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/inv.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/jc69.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/jtt.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/k80.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/lg08.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/lg08_freq.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/m1a.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/m2a.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/m2a_test.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/m3.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/m3_test.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/m7.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/m8.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/m8a.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/m8a_test.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-
Phy-3.6.1/bindings/models/markov_modulate_mixture.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/mg94.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/mg94_ext.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/mg94k.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/mixture.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/multi_rate.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/multiMixtureModel.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/mut_sel.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/mut_sel_aa.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/pam.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/parameter_mixture.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/rna_16a.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/rs05.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/rs07.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/rs07_relaxed_rates.json
to /opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy
/bali-phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/sample.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/scaled_mixture.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/tn93.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/tn93_sym.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/wag.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/wag_freq.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/x2.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/x2_sym.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/x2x2.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/x3.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/x3_sym.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/x3x3.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/Covarion/galtier01.json
to /opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy
/bali-phy/work/destroot/opt/local/lib/bali-phy/bindings/models/Covarion
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-
Phy-3.6.1/bindings/models/Covarion/huelsenbeck02.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models/Covarion
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/Covarion/ts98.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models/Covarion
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/Covarion/wang07.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models/Covarion
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/Frequencies/uniform.json
to /opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy
/bali-phy/work/destroot/opt/local/lib/bali-phy/bindings/models/Frequencies
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/Rates/free.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models/Rates
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/Rates/gamma.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models/Rates
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/bindings/models/Rates/log_normal.json to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/bindings/models/Rates
Installing subdir /opt/local/var/macports/build
/_opt_local_ppcports_science_bali-phy/bali-phy/work/BAli-Phy-3.6.1/help to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/alphabets.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/parameters.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/alphabets/Codons.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/alphabets
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/alphabets/Doublets.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/alphabets
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/alphabets/genetic-code.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/alphabets
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/alphabets/Triplets.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/alphabets
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/commands/align.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/commands
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/commands/alphabet.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/commands
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/commands/branch-lengths.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/commands
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/commands/config.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/commands
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/commands/disable.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/commandsTraceback (most
recent call last):
File
"/opt/local/Library/Frameworks/Python.framework/Versions/3.13/lib/python3.13
/site-packages/mesonbuild/mesonmain.py", line 193, in run
return options.run_func(options)
~~~~~~~~~~~~~~~~^^^^^^^^^
File
"/opt/local/Library/Frameworks/Python.framework/Versions/3.13/lib/python3.13
/site-packages/mesonbuild/minstall.py", line 890, in run
installer.do_install(datafilename)
~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^
File
"/opt/local/Library/Frameworks/Python.framework/Versions/3.13/lib/python3.13
/site-packages/mesonbuild/minstall.py", line 564, in do_install
self.install_subdirs(d, dm, destdir, fullprefix) # Must be first,
because it needs to delete the old subtree.
~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/opt/local/Library/Frameworks/Python.framework/Versions/3.13/lib/python3.13
/site-packages/mesonbuild/minstall.py", line 638, in install_subdirs
self.do_copydir(d, i.path, full_dst_dir, i.exclude, i.install_mode,
dm,
~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
follow_symlinks=i.follow_symlinks)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/opt/local/Library/Frameworks/Python.framework/Versions/3.13/lib/python3.13
/site-packages/mesonbuild/minstall.py", line 539, in do_copydir
self.do_copyfile(abs_src, abs_dst, follow_symlinks=follow_symlinks)
~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/opt/local/Library/Frameworks/Python.framework/Versions/3.13/lib/python3.13
/site-packages/mesonbuild/minstall.py", line 437, in do_copyfile
self.copy2(from_file, to_file, follow_symlinks=follow_symlinks)
~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/opt/local/Library/Frameworks/Python.framework/Versions/3.13/lib/python3.13
/site-packages/mesonbuild/minstall.py", line 336, in copy2
shutil.copy2(*args, **kwargs)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^
File
"/opt/local/Library/Frameworks/Python.framework/Versions/3.13/lib/python3.13/shutil.py",
line 468, in copy2
copyfile(src, dst, follow_symlinks=follow_symlinks)
~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/opt/local/Library/Frameworks/Python.framework/Versions/3.13/lib/python3.13/shutil.py",
line 260, in copyfile
with open(src, 'rb') as fsrc:
~~~~^^^^^^^^^^^
IsADirectoryError: [Errno 21] Is a directory:
'/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/BAli-Phy-3.6.1/examples/models/regresssion'
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/commands/enable.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/commands
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/commands/imodel.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/commands
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/commands/iterations.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/commands
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/commands/link.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/commands
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/commands/model.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/commands
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/commands/name.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/commands
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/commands/package-path.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/commands
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/commands/pre-burnin.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/commands
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/commands/print.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/commands
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/commands/Rao-Blackwellize.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/commands
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/commands/scale.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/commands
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/commands/seed.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/commands
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/commands/set.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/commands
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/commands/smodel.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/commands
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/commands/subsample.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/commands
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/commands/test.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/commands
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/commands/tree.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/commands
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/commands/unalign.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/commands
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/commands/verbose.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/commands
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/commands/version.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/commands
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/help/parameters/priors.txt to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/lib/bali-phy/help/parameters
Installing subdir /opt/local/var/macports/build
/_opt_local_ppcports_science_bali-phy/bali-phy/work/BAli-
Phy-3.6.1/examples to /opt/local/var/macports/build
/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/share/doc/bali-phy/examples
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/examples/models/Airline.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This currently
copies
the file by default, but will be changed in a future version of Meson to
copy
the link instead. Set follow_symlinks to true to preserve current
behavior, or
false to copy the link.
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/examples/models/Coalmine.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This currently
copies
the file by default, but will be changed in a future version of Meson to
copy
the link instead. Set follow_symlinks to true to preserve current
behavior, or
false to copy the link.
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/examples/models/Demo1.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This currently
copies
the file by default, but will be changed in a future version of Meson to
copy
the link instead. Set follow_symlinks to true to preserve current
behavior, or
false to copy the link.
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/examples/models/Demo2.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This currently
copies
the file by default, but will be changed in a future version of Meson to
copy
the link instead. Set follow_symlinks to true to preserve current
behavior, or
false to copy the link.
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/examples/models/Demo3.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This currently
copies
the file by default, but will be changed in a future version of Meson to
copy
the link instead. Set follow_symlinks to true to preserve current
behavior, or
false to copy the link.
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/examples/models/Demo4.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This currently
copies
the file by default, but will be changed in a future version of Meson to
copy
the link instead. Set follow_symlinks to true to preserve current
behavior, or
false to copy the link.
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/examples/models/Demo5.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This currently
copies
the file by default, but will be changed in a future version of Meson to
copy
the link instead. Set follow_symlinks to true to preserve current
behavior, or
false to copy the link.
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/examples/models/Demo6.hs to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This currently
copies
the file by default, but will be changed in a future version of Meson to
copy
the link instead. Set follow_symlinks to true to preserve current
behavior, or
false to copy the link.
Installing /opt/local/var/macports/build/_opt_local_ppcports_science_bali-
phy/bali-phy/work/BAli-Phy-3.6.1/examples/models/regresssion to
/opt/local/var/macports/build/_opt_local_ppcports_science_bali-phy/bali-
phy/work/destroot/opt/local/share/doc/bali-phy/examples/models
Warning: trying to copy a symlink that points to a file. This currently
copies
the file by default, but will be changed in a future version of Meson to
copy
the link instead. Set follow_symlinks to true to preserve current
behavior, or
false to copy the link.
ERROR: Unhandled python OSError. This is probably not a Meson bug, but an
issue with your build environment.
Command failed: cd "/opt/local/var/macports/build
/_opt_local_ppcports_science_bali-phy/bali-phy/work/build" &&
/opt/local/bin/meson install
Exit code: 21
}}}
No idea why this fails. As compared to the port in the master, I only
added this patch to fix build with gcc14 (which cannot interfere with
destroot):
{{{
--- src/util/include/util/range.H 2021-08-25 06:40:50.000000000
+0800
+++ src/util/include/util/range.H 2025-05-10 00:02:33.000000000
+0800
@@ -1,6 +1,7 @@
#ifndef UTIL_RANGE_H
#define UTIL_RANGE_H
+#include <algorithm>
#include <vector>
#include <functional>
--- src/util/include/util/set.H 2021-08-25 06:40:50.000000000 +0800
+++ src/util/include/util/set.H 2025-05-10 00:09:05.000000000 +0800
@@ -1,6 +1,7 @@
#ifndef UTIL_SET_H
#define UTIL_SET_H
+#include <algorithm>
#include <vector>
#include <set>
#include <map>
}}}
--
Ticket URL: <https://trac.macports.org/ticket/72458>
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