Re: [MacPorts] #72485: R-nlme - Unable to build - ERROR: dependency ‘lattice’ is not available for package ‘nlme’

MacPorts noreply at macports.org
Thu May 15 13:10:07 UTC 2025


#72485: R-nlme - Unable to build - ERROR: dependency ‘lattice’ is not available for
package ‘nlme’
---------------------+--------------------
  Reporter:  RobK88  |      Owner:  (none)
      Type:  defect  |     Status:  new
  Priority:  Normal  |  Milestone:
 Component:  ports   |    Version:  2.10.7
Resolution:          |   Keywords:
      Port:  R-nlme  |
---------------------+--------------------

Comment (by RobK88):

 It looks like it might be a circular dependency issue:

 {{{

 --->  Found 27 broken files, matching files to ports
 --->  Found 22 broken ports, determining rebuild order
 You can always run 'port rev-upgrade' again to fix errors.
 The following ports will be rebuilt:
  R-foreign @0.8-87
  R-KernSmooth @2.23-24+gcc13
  R-lattice @0.22-6
  R-MASS @7.3-61
  R-class @7.3-22
  R-nlme @3.1-166+gcc13
  R-nnet @7.3-19
  R-rpart @4.1.23
  R-spatial @7.3-17
  R-rlang @1.1.4
  R-cli @3.6.3
  R-Matrix @1.7-1+gcc13
  R-mgcv @1.9-1+gcc13
  R-survival @3.7-0
  R-sys @3.4.3
  R-askpass @1.2.1
  R-glue @1.8.0
  R-vctrs @0.6.5
  R-bignum @0.3.2
  R-curl @6.0.1
  R-gpg @1.3.0
  R-cluster @2.1.8+gcc13
 Continue? [Y/n]: Y
 --->  Computing dependencies for R-foreign
 --->  Cleaning R-foreign
 --->  Computing dependencies for R-KernSmooth
 --->  Fetching archive for R-KernSmooth
 --->  Attempting to fetch
 R-KernSmooth-2.23-24_0+gcc14.darwin_15.x86_64.tbz2 from
 http://packages.macports.org/R-KernSmooth
 --->  Attempting to fetch
 R-KernSmooth-2.23-24_0+gcc14.darwin_15.x86_64.tbz2 from
 http://ywg.ca.packages.macports.org/mirror/macports/packages/R-KernSmooth
 --->  Attempting to fetch
 R-KernSmooth-2.23-24_0+gcc14.darwin_15.x86_64.tbz2 from
 http://bos.us.packages.macports.org/R-KernSmooth
 --->  Fetching distfiles for R-KernSmooth
 --->  Attempting to fetch KernSmooth_2.23-24.tar.gz from
 http://distfiles.macports.org/R-KernSmooth
 --->  Verifying checksums for R-KernSmooth
 --->  Extracting R-KernSmooth
 --->  Configuring R-KernSmooth
 --->  Building R-KernSmooth
 --->  Staging R-KernSmooth into destroot
 --->  Installing R-KernSmooth @2.23-24_0+gcc14
 --->  Cleaning R-KernSmooth
 --->  Computing dependencies for R-KernSmooth
 --->  Deactivating R-KernSmooth @2.23-24_0+gcc13
 --->  Cleaning R-KernSmooth
 --->  Activating R-KernSmooth @2.23-24_0+gcc14
 --->  Cleaning R-KernSmooth
 --->  Computing dependencies for R-lattice
 --->  Cleaning R-lattice
 --->  Computing dependencies for R-MASS
 --->  Cleaning R-MASS
 --->  Computing dependencies for R-class
 --->  Cleaning R-class
 --->  Computing dependencies for R-nlme
 --->  Fetching archive for R-nlme
 --->  Attempting to fetch R-nlme-3.1-166_0+gcc14.darwin_15.x86_64.tbz2
 from http://packages.macports.org/R-nlme
 --->  Attempting to fetch R-nlme-3.1-166_0+gcc14.darwin_15.x86_64.tbz2
 from http://ywg.ca.packages.macports.org/mirror/macports/packages/R-nlme
 --->  Attempting to fetch R-nlme-3.1-166_0+gcc14.darwin_15.x86_64.tbz2
 from http://bos.us.packages.macports.org/R-nlme
 --->  Fetching distfiles for R-nlme
 --->  Verifying checksums for R-nlme
 --->  Extracting R-nlme
 --->  Configuring R-nlme
 --->  Building R-nlme
 Error: Failed to build R-nlme: command execution failed
 Error: See
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-nlme/R-nlme/main.log for details.
 Error: rev-upgrade failed: Error rebuilding R-nlme
 Error: Follow https://guide.macports.org/#project.tickets if you believe
 there is a bug.
 --->  Some of the ports you installed have notes:
   R has the following notes:
     Some R packages using OpenMP may require additional flags in the
 Makevar file (e.g. data.table) to build with OpenMP support.
     Please consult package documentation.
 }}}

-- 
Ticket URL: <https://trac.macports.org/ticket/72485#comment:1>
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