[MacPorts] #74222: Coot segmentation fault

MacPorts noreply at macports.org
Thu Jul 16 03:07:58 UTC 2026


#74222: Coot segmentation fault
-------------------------+------------------------
  Reporter:  mabianchet  |      Owner:  reneeotten
      Type:  defect      |     Status:  assigned
  Priority:  Normal      |  Milestone:
 Component:  ports       |    Version:  2.12.5
Resolution:              |   Keywords:
      Port:  coot        |
-------------------------+------------------------

Comment (by reneeotten):

 It works fine for me... let's see if we can troubleshoot this a bit more.

 Can you please post here the output of
 {{{
 sh -c 'echo "macOS $(sw_vers -productVersion) $(sw_vers -buildVersion)
 $(uname -m)"; xcode=$(xcodebuild -version 2>/dev/null); if [ $? == 0 ];
 then echo "$(echo "$xcode" | awk '\''NR==1{x=$0}END{print x" "$NF}'\'')";
 else echo "Command Line Tools $(pkgutil --pkg-
 info=com.apple.pkg.CLTools_Executables | awk '\''/version:/ {print
 $2}'\'')"; fi' | tee /dev/tty | pbcopy
 }}}

 I did build the package locally from source, do you know whether you got a
 pre-built binary or did you need to compile {{{coot}}} yourself (this
 takes a while). I will try to rebuild locally and see if something is
 failing with a newer compiler and/or something else... (I cannot get a
 MacPorts binary since there is no buildbot for macOS 26 and x86_64).

 If you installed a binary, could you please try to build it yourself using
 the command below?

 {{{
 sudo port uninstall coot && sudo port clean --all coot && sudo port -s
 install coot
 }}}

 it would be good to know whether that makes a difference.

-- 
Ticket URL: <https://trac.macports.org/ticket/74222#comment:4>
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