hdf5 1.6.6_0

[Kuniaki Mukai]

Hi,

I got the  error message below  while upgrading hdf5 with "port upgrade outdated". 

This upgrading is not urgent for me,  but I would like to know how to fix it for curious
because I never had a similar problem before with "port upgrade outdated" command for regularly use.

Kuniaki Mukai


% port outdated
The following installed ports are outdated:
hdf5                           1.6.5_0 < 1.6.6_0               
% sudo port upgrade outdated
--->  Fetching hdf5
--->  Attempting to fetch hdf5-1.6.6.tar.gz from ftp://ftp.hdfgroup.org/HDF5/current/src/
--->  Verifying checksum(s) for hdf5
--->  Extracting hdf5
--->  Applying patches to hdf5
--->  Configuring hdf5
--->  Building hdf5 with target all
Error: Target org.macports.build returned: shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_hdf5/work/hdf5-1.6.6" && make all " returned error 2
Command output: gcc -O2 -std=c99 -Wno-long-long -O -fomit-frame-pointer -finline-functions -I. -I. -I../src -I../src -UH5_DEBUG_API -DNDEBUG -I/opt/local/lib/include -I/opt/local/include -c stream_test.c  -fno-common -DPIC -o .libs/stream_test.lo
gcc -O2 -std=c99 -Wno-long-long -O -fomit-frame-pointer -finline-functions -I. -I. -I../src -I../src -UH5_DEBUG_API -DNDEBUG -I/opt/local/lib/include -I/opt/local/include -c stream_test.c -o stream_test.o >/dev/null 2>&1
mv -f .libs/stream_test.lo stream_test.lo
libtool: link: warning: `AC_LIBTOOL_DLOPEN' not used. Assuming no dlopen support.
rm -f .libs/stream_test.nm .libs/stream_test.nmS .libs/stream_test.nmT
creating .libs/stream_testS.c
generating symbol list for `stream_test'
(cd .libs && gcc -c -fno-builtin "stream_testS.c")
rm -f .libs/stream_testS.c .libs/stream_test.nm .libs/stream_test.nmS .libs/stream_test.nmT
gcc .libs/stream_testS.o -O2 -std=c99 -Wno-long-long -O -fomit-frame-pointer -finline-functions -o .libs/stream_test stream_test.o  -L./.libs -lh5test -L/opt/local/lib -L/opt/local/lib/lib -L../src/.libs -lhdf5 -lz -lm 
/usr/bin/ld: warning -L: directory name (/opt/local/lib/lib) does not exist
creating stream_test
rm -f .libs/getname.lo
gcc -O2 -std=c99 -Wno-long-long -O -fomit-frame-pointer -finline-functions -I. -I. -I../src -I../src -UH5_DEBUG_API -DNDEBUG -I/opt/local/lib/include -I/opt/local/include -c getname.c  -fno-common -DPIC -o .libs/getname.lo
gcc -O2 -std=c99 -Wno-long-long -O -fomit-frame-pointer -finline-functions -I. -I. -I../src -I../src -UH5_DEBUG_API -DNDEBUG -I/opt/local/lib/include -I/opt/local/include -c getname.c -o getname.o >/dev/null 2>&1
mv -f .libs/getname.lo getname.lo
libtool: link: warning: `AC_LIBTOOL_DLOPEN' not used. Assuming no dlopen support.
rm -f .libs/getname.nm .libs/getname.nmS .libs/getname.nmT
creating .libs/getnameS.c
generating symbol list for `getname'
(cd .libs && gcc -c -fno-builtin "getnameS.c")
rm -f .libs/getnameS.c .libs/getname.nm .libs/getname.nmS .libs/getname.nmT
gcc .libs/getnameS.o -O2 -std=c99 -Wno-long-long -O -fomit-frame-pointer -finline-functions -o .libs/getname getname.o  -L./.libs -lh5test -L/opt/local/lib -L/opt/local/lib/lib -L../src/.libs -lhdf5 -lz -lm 
/usr/bin/ld: warning -L: directory name (/opt/local/lib/lib) does not exist
/usr/bin/ld: Undefined symbols:
_H5G_user_path_test
collect2: ld returned 1 exit status
make[2]: *** [getname] Error 1
make[1]: *** [tests] Error 1
make: *** [all] Error 2

Error: Unable to upgrade port: 1