Problem installing afni

Doctor alf doctor.alf at gmail.com
Sun Jul 27 02:05:22 PDT 2008


Hi all,

New to MacPorts and trying to install the afni application.

I installed the latest MacPorts and set up the .profile.

The install of afni initially runs well, with all dependencies downloaded
and installed. afni is then downloaded, extracted and configured.

The problem comes about when building afni, with the following error message
in the terminal:

Error: Target org.macports.build returned: shell command " cd
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_afni/work/afni_src"
> && make vastness " returned error 2
> Command output: cc -march=pentium-m -mtune=prescott -DDARWIN  -Wcomment
> -Wformat -DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -DDONT_USE_MCW_MALLOC -O
> -I.. -O -I/usr/X11R6/include -I./ -I../ -Igts/src
> -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_afni/work/openMotif-2.2.3/lib
> -I/opt/local/include -I../nifti/niftilib -I../nifti/znzlib -I../3DEdge/src
> -c -o glut_menu.o glut_menu.c
> cc -march=pentium-m -mtune=prescott -DDARWIN  -Wcomment -Wformat
> -DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -DDONT_USE_MCW_MALLOC -O -I.. -O
> -I/usr/X11R6/include -I./ -I../ -Igts/src
> -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_afni/work/openMotif-2.2.3/lib
> -I/opt/local/include -I../nifti/niftilib -I../nifti/znzlib -I../3DEdge/src
> -c -o glut_modifier.o glut_modifier.c
> cc -march=pentium-m -mtune=prescott -DDARWIN  -Wcomment -Wformat
> -DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -DDONT_USE_MCW_MALLOC -O -I.. -O
> -I/usr/X11R6/include -I./ -I../ -Igts/src
> -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_afni/work/openMotif-2.2.3/lib
> -I/opt/local/include -I../nifti/niftilib -I../nifti/znzlib -I../3DEdge/src
> -c -o glut_overlay.o glut_overlay.c
> cc -march=pentium-m -mtune=prescott -DDARWIN  -Wcomment -Wformat
> -DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -DDONT_USE_MCW_MALLOC -O -I.. -O
> -I/usr/X11R6/include -I./ -I../ -Igts/src
> -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_afni/work/openMotif-2.2.3/lib
> -I/opt/local/include -I../nifti/niftilib -I../nifti/znzlib -I../3DEdge/src
> -c -o glut_shapes.o glut_shapes.c
> cc -march=pentium-m -mtune=prescott -DDARWIN  -Wcomment -Wformat
> -DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -DDONT_USE_MCW_MALLOC -O -I.. -O
> -I/usr/X11R6/include -I./ -I../ -Igts/src
> -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_afni/work/openMotif-2.2.3/lib
> -I/opt/local/include -I../nifti/niftilib -I../nifti/znzlib -I../3DEdge/src
> -c -o glut_space.o glut_space.c
> cc -march=pentium-m -mtune=prescott -DDARWIN  -Wcomment -Wformat
> -DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -DDONT_USE_MCW_MALLOC -O -I.. -O
> -I/usr/X11R6/include -I./ -I../ -Igts/src
> -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_afni/work/openMotif-2.2.3/lib
> -I/opt/local/include -I../nifti/niftilib -I../nifti/znzlib -I../3DEdge/src
> -c -o glut_stroke.o glut_stroke.c
> cc -march=pentium-m -mtune=prescott -DDARWIN  -Wcomment -Wformat
> -DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -DDONT_USE_MCW_MALLOC -O -I.. -O
> -I/usr/X11R6/include -I./ -I../ -Igts/src
> -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_afni/work/openMotif-2.2.3/lib
> -I/opt/local/include -I../nifti/niftilib -I../nifti/znzlib -I../3DEdge/src
> -c -o glut_swidth.o glut_swidth.c
> cc -march=pentium-m -mtune=prescott -DDARWIN  -Wcomment -Wformat
> -DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -DDONT_USE_MCW_MALLOC -O -I.. -O
> -I/usr/X11R6/include -I./ -I../ -Igts/src
> -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_afni/work/openMotif-2.2.3/lib
> -I/opt/local/include -I../nifti/niftilib -I../nifti/znzlib -I../3DEdge/src
> -c -o glut_tablet.o glut_tablet.c
> cc -march=pentium-m -mtune=prescott -DDARWIN  -Wcomment -Wformat
> -DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -DDONT_USE_MCW_MALLOC -O -I.. -O
> -I/usr/X11R6/include -I./ -I../ -Igts/src
> -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_afni/work/openMotif-2.2.3/lib
> -I/opt/local/include -I../nifti/niftilib -I../nifti/znzlib -I../3DEdge/src
> -c -o glut_teapot.o glut_teapot.c
> cc -march=pentium-m -mtune=prescott -DDARWIN  -Wcomment -Wformat
> -DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -DDONT_USE_MCW_MALLOC -O -I.. -O
> -I/usr/X11R6/include -I./ -I../ -Igts/src
> -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_afni/work/openMotif-2.2.3/lib
> -I/opt/local/include -I../nifti/niftilib -I../nifti/znzlib -I../3DEdge/src
> -c -o glut_util.o glut_util.c
> cc -march=pentium-m -mtune=prescott -DDARWIN  -Wcomment -Wformat
> -DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -DDONT_USE_MCW_MALLOC -O -I.. -O
> -I/usr/X11R6/include -I./ -I../ -Igts/src
> -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_afni/work/openMotif-2.2.3/lib
> -I/opt/local/include -I../nifti/niftilib -I../nifti/znzlib -I../3DEdge/src
> -c -o glut_win.o glut_win.c
> cc -march=pentium-m -mtune=prescott -DDARWIN  -Wcomment -Wformat
> -DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -DDONT_USE_MCW_MALLOC -O -I.. -O
> -I/usr/X11R6/include -I./ -I../ -Igts/src
> -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_afni/work/openMotif-2.2.3/lib
> -I/opt/local/include -I../nifti/niftilib -I../nifti/znzlib -I../3DEdge/src
> -c -o glut_winmisc.o glut_winmisc.c
> cc -march=pentium-m -mtune=prescott -DDARWIN  -Wcomment -Wformat
> -DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -DDONT_USE_MCW_MALLOC -O -I.. -O
> -I/usr/X11R6/include -I./ -I../ -Igts/src
> -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_afni/work/openMotif-2.2.3/lib
> -I/opt/local/include -I../nifti/niftilib -I../nifti/znzlib -I../3DEdge/src
> -c -o glut_8x13.o glut_8x13.c
> cc -march=pentium-m -mtune=prescott -DDARWIN  -Wcomment -Wformat
> -DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -DDONT_USE_MCW_MALLOC -O -I.. -O
> -I/usr/X11R6/include -I./ -I../ -Igts/src
> -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_afni/work/openMotif-2.2.3/lib
> -I/opt/local/include -I../nifti/niftilib -I../nifti/znzlib -I../3DEdge/src
> -c -o glut_9x15.o glut_9x15.c
> cc -march=pentium-m -mtune=prescott -DDARWIN  -Wcomment -Wformat
> -DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -DDONT_USE_MCW_MALLOC -O -I.. -O
> -I/usr/X11R6/include -I./ -I../ -Igts/src
> -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_afni/work/openMotif-2.2.3/lib
> -I/opt/local/include -I../nifti/niftilib -I../nifti/znzlib -I../3DEdge/src
> -c -o glut_hel10.o glut_hel10.c
> cc -march=pentium-m -mtune=prescott -DDARWIN  -Wcomment -Wformat
> -DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -DDONT_USE_MCW_MALLOC -O -I.. -O
> -I/usr/X11R6/include -I./ -I../ -Igts/src
> -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_afni/work/openMotif-2.2.3/lib
> -I/opt/local/include -I../nifti/niftilib -I../nifti/znzlib -I../3DEdge/src
> -c -o glut_hel12.o glut_hel12.c
> cc -march=pentium-m -mtune=prescott -DDARWIN  -Wcomment -Wformat
> -DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -DDONT_USE_MCW_MALLOC -O -I.. -O
> -I/usr/X11R6/include -I./ -I../ -Igts/src
> -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_afni/work/openMotif-2.2.3/lib
> -I/opt/local/include -I../nifti/niftilib -I../nifti/znzlib -I../3DEdge/src
> -c -o glut_hel18.o glut_hel18.c
> cc -march=pentium-m -mtune=prescott -DDARWIN  -Wcomment -Wformat
> -DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -DDONT_USE_MCW_MALLOC -O -I.. -O
> -I/usr/X11R6/include -I./ -I../ -Igts/src
> -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_afni/work/openMotif-2.2.3/lib
> -I/opt/local/include -I../nifti/niftilib -I../nifti/znzlib -I../3DEdge/src
> -c -o glut_tr10.o glut_tr10.c
> cc -march=pentium-m -mtune=prescott -DDARWIN  -Wcomment -Wformat
> -DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -DDONT_USE_MCW_MALLOC -O -I.. -O
> -I/usr/X11R6/include -I./ -I../ -Igts/src
> -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_afni/work/openMotif-2.2.3/lib
> -I/opt/local/include -I../nifti/niftilib -I../nifti/znzlib -I../3DEdge/src
> -c -o glut_tr24.o glut_tr24.c
> cc -march=pentium-m -mtune=prescott -DDARWIN  -Wcomment -Wformat
> -DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -DDONT_USE_MCW_MALLOC -O -I.. -O
> -I/usr/X11R6/include -I./ -I../ -Igts/src
> -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_afni/work/openMotif-2.2.3/lib
> -I/opt/local/include -I../nifti/niftilib -I../nifti/znzlib -I../3DEdge/src
> -c -o glut_roman.o glut_roman.c
> cc -march=pentium-m -mtune=prescott -DDARWIN  -Wcomment -Wformat
> -DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -DDONT_USE_MCW_MALLOC -O -I.. -O
> -I/usr/X11R6/include -I./ -I../ -Igts/src
> -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_afni/work/openMotif-2.2.3/lib
> -I/opt/local/include -I../nifti/niftilib -I../nifti/znzlib -I../3DEdge/src
> -c -o glut_mroman.o glut_mroman.c
> cc -march=pentium-m -mtune=prescott -DDARWIN  -Wcomment -Wformat
> -DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -DDONT_USE_MCW_MALLOC -O -I.. -O
> -I/usr/X11R6/include -I./ -I../ -Igts/src
> -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_afni/work/openMotif-2.2.3/lib
> -I/opt/local/include -I../nifti/niftilib -I../nifti/znzlib -I../3DEdge/src
> -c -o layerutil.o layerutil.c
> ar cr libglut.a glut_bitmap.o glut_bwidth.o glut_cindex.o glut_cursor.o
> glut_dials.o glut_event.o glut_ext.o glut_fullscrn.o glut_get.o glut_init.o
> glut_input.o glut_menu.o glut_modifier.o glut_overlay.o glut_shapes.o
> glut_space.o glut_stroke.o glut_swidth.o glut_tablet.o glut_teapot.o
> glut_util.o glut_win.o glut_winmisc.o glut_8x13.o glut_9x15.o glut_hel10.o
> glut_hel12.o glut_hel18.o glut_tr10.o glut_tr24.o glut_roman.o glut_mroman.o
> layerutil.o
> cc -march=pentium-m -mtune=prescott -DDARWIN  -Wcomment -Wformat
> -DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -DDONT_USE_MCW_MALLOC -O
> -DSUMA_COMPILED   -I/usr/X11R6/include -I./ -I../ -Igts/src
> -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_afni/work/openMotif-2.2.3/lib
> -I/opt/local/include -I../nifti/niftilib -I../nifti/znzlib -I../3DEdge/src
> -c SUMA_trackball.c
> In file included from SUMA_trackball.c:1:
> SUMA_suma.h:100:60: error: GL/GLwDrawA.h: No such file or directory
> make[1]: *** [SUMA_trackball.o] Error 1
> cp: SUMA/libSUMA.a: No such file or directory
> cp: SUMA/libSUMA.a: No such file or directory
> make: *** [libSUMA.a] Error 1
>
> Error: Status 1 encountered during processing.


Any ideas about what this could be and how to resolve it? Again, I am a
newcomer to MacPorts so please don't bite :)

Cheers
alf
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