OpenMPI on SL
nuvolare
nuvolare at email.it
Fri Sep 18 07:06:23 PDT 2009
Hello how I can cancell from this maclist?
Thnak you
Il giorno 18/set/09, alle ore 16:02, Nils ha scritto:
> Hi all
>
> I just installed ports on SL so far I was able to install various
> things [1] however openmpi does not seem to compile. I attached the
> build log below [2], hoping that somebody can help me :)
>
> I also have two further questions:
> - Instead of building everything on your own machine, are there binary
> packages available?
> - When port builds the packages (eg after typing port install blah)
> does it use all available cores for compiling and if not, where can I
> configure that?
>
> Nils
>
>
> [1]
>
> The following ports are currently installed:
> autoconf @2.64_2 (active)
> automake @1.11_0 (active)
> boost @1.40.0_1 (active)
> boost-jam @3.1.17_0 (active)
> bzip2 @1.0.5_2+darwin (active)
> cmake @2.6.4_1 (active)
> curl @7.19.6_0 (active)
> dbus @1.2.14_0 (active)
> expat @2.0.1_0 (active)
> gettext @0.17_4 (active)
> git-core @1.6.4.3_0+doc (active)
> gmp @4.3.1_1 (active)
> gmp-cxx-wrappers @4.2.1_2+darwin_i386
> gperf @3.0.4_0 (active)
> help2man @1.36.4_1 (active)
> jpeg @6b_3 (active)
> lcms @1.18a_0 (active)
> libiconv @1.13_0 (active)
> libidn @1.15_0 (active)
> libmng @1.0.10_0 (active)
> libpng @1.2.38_0 (active)
> libtool @2.2.6a_0 (active)
> lzmautils @4.32.7_1 (active)
> m4 @1.4.13_0 (active)
> metis @4.0.1_0 (active)
> mpfr @2.4.1-p4_1 (active)
> ncurses @5.7_0+darwin_10 (active)
> ncursesw @5.7_0+darwin_10 (active)
> openssl @0.9.8k_0+darwin (active)
> p5-error @0.17015_0 (active)
> p5-locale-gettext @1.05_0 (active)
> perl5 @5.8.9_0 (active)
> perl5.8 @5.8.9_3 (active)
> pkgconfig @0.23_1 (active)
> popt @1.15_0 (active)
> readline @6.0.000_1+darwin (active)
> rsync @3.0.6_0 (active)
> sqlite3 @3.6.18_0 (active)
> tiff @3.9.1_0+macosx (active)
> zlib @1.2.3_3 (active)
>
> [2]
>
> ~ # port install openmpi
> ---> Computing dependencies for openmpi
> ---> Fetching gcc43
> ---> Attempting to fetch gcc-core-4.3.4.tar.bz2 from
> ftp://ftp.lip6.fr/pub/gnu//gcc/gcc-4.3.4
> ---> Attempting to fetch gcc-fortran-4.3.4.tar.bz2 from
> ftp://ftp.lip6.fr/pub/gnu//gcc/gcc-4.3.4
> ---> Attempting to fetch gcc-g++-4.3.4.tar.bz2 from
> ftp://ftp.lip6.fr/pub/gnu//gcc/gcc-4.3.4
> ---> Attempting to fetch gcc-java-4.3.4.tar.bz2 from
> ftp://ftp.lip6.fr/pub/gnu//gcc/gcc-4.3.4
> ---> Attempting to fetch gcc-objc-4.3.4.tar.bz2 from
> ftp://ftp.lip6.fr/pub/gnu//gcc/gcc-4.3.4
> ---> Verifying checksum(s) for gcc43
> ---> Extracting gcc43
> ---> Configuring gcc43
> ---> Building gcc43
> Error: Target org.macports.build returned: shell command " cd
> "/opt/local/var/macports/build/
> _opt_local_var_macports_sources_rsync.macports.org_release_ports_lang_
> gcc43/work/build"
> && /usr/bin/make -j2 all " returned error 2
> Command output:
> /opt/local/var/macports/build/
> _opt_local_var_macports_sources_rsync.macports.org_release_ports_lang_
> gcc43/work/build/./prev-gcc/xgcc
> -B/opt/local/var/macports/build/
> _opt_local_var_macports_sources_rsync.macports.org_release_ports_lang_
> gcc43/work/build/./prev-gcc/
> -B/opt/local/x86_64-apple-darwin10/bin/ -c -g -O2 -DIN_GCC -W
> -Wall -Wwrite-strings -Wstrict-prototypes -Wmissing-prototypes
> -Wold-style-definition -Wmissing-format-attribute -pedantic
> -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings
> -DHAVE_CONFIG_H -I. -I. -I../../gcc-4.3.4/gcc -I../../gcc-4.3.4/gcc/.
> -I../../gcc-4.3.4/gcc/../include
> -I../../gcc-4.3.4/gcc/../libcpp/include -I/opt/local/include
> -I/opt/local/include -I../../gcc-4.3.4/gcc/../libdecnumber
> -I../../gcc-4.3.4/gcc/../libdecnumber/dpd -I../libdecnumber
> ../../gcc-4.3.4/gcc/value-prof.c -o value-prof.o
> /opt/local/var/macports/build/
> _opt_local_var_macports_sources_rsync.macports.org_release_ports_lang_
> gcc43/work/build/./prev-gcc/xgcc
> -B/opt/local/var/macports/build/
> _opt_local_var_macports_sources_rsync.macports.org_release_ports_lang_
> gcc43/work/build/./prev-gcc/
> -B/opt/local/x86_64-apple-darwin10/bin/ -c -g -O2 -DIN_GCC -W
> -Wall -Wwrite-strings -Wstrict-prototypes -Wmissing-prototypes
> -Wold-style-definition -Wmissing-format-attribute -pedantic
> -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings
> -DHAVE_CONFIG_H -I. -I. -I../../gcc-4.3.4/gcc -I../../gcc-4.3.4/gcc/.
> -I../../gcc-4.3.4/gcc/../include
> -I../../gcc-4.3.4/gcc/../libcpp/include -I/opt/local/include
> -I/opt/local/include -I../../gcc-4.3.4/gcc/../libdecnumber
> -I../../gcc-4.3.4/gcc/../libdecnumber/dpd -I../libdecnumber
> ../../gcc-4.3.4/gcc/ipa-inline.c -o ipa-inline.o
> /opt/local/var/macports/build/
> _opt_local_var_macports_sources_rsync.macports.org_release_ports_lang_
> gcc43/work/build/./prev-gcc/xgcc
> -B/opt/local/var/macports/build/
> _opt_local_var_macports_sources_rsync.macports.org_release_ports_lang_
> gcc43/work/build/./prev-gcc/
> -B/opt/local/x86_64-apple-darwin10/bin/ -c -g -O2 -DIN_GCC -W
> -Wall -Wwrite-strings -Wstrict-prototypes -Wmissing-prototypes
> -Wold-style-definition -Wmissing-format-attribute -pedantic
> -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings
> -DHAVE_CONFIG_H -I. -I. -I../../gcc-4.3.4/gcc -I../../gcc-4.3.4/gcc/.
> -I../../gcc-4.3.4/gcc/../include
> -I../../gcc-4.3.4/gcc/../libcpp/include -I/opt/local/include
> -I/opt/local/include -I../../gcc-4.3.4/gcc/../libdecnumber
> -I../../gcc-4.3.4/gcc/../libdecnumber/dpd -I../libdecnumber
> ../../gcc-4.3.4/gcc/ipa-struct-reorg.c -o ipa-struct-reorg.o
> /opt/local/var/macports/build/
> _opt_local_var_macports_sources_rsync.macports.org_release_ports_lang_
> gcc43/work/build/./prev-gcc/xgcc
> -B/opt/local/var/macports/build/
> _opt_local_var_macports_sources_rsync.macports.org_release_ports_lang_
> gcc43/work/build/./prev-gcc/
> -B/opt/local/x86_64-apple-darwin10/bin/ -c -g -O2 -DIN_GCC -W
> -Wall -Wwrite-strings -Wstrict-prototypes -Wmissing-prototypes
> -Wold-style-definition -Wmissing-format-attribute -pedantic
> -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings
> -DHAVE_CONFIG_H -I. -I. -I../../gcc-4.3.4/gcc -I../../gcc-4.3.4/gcc/.
> -I../../gcc-4.3.4/gcc/../include
> -I../../gcc-4.3.4/gcc/../libcpp/include -I/opt/local/include
> -I/opt/local/include -I../../gcc-4.3.4/gcc/../libdecnumber
> -I../../gcc-4.3.4/gcc/../libdecnumber/dpd -I../libdecnumber
> ../../gcc-4.3.4/gcc/gcov.c -o gcov.o
> /opt/local/var/macports/build/
> _opt_local_var_macports_sources_rsync.macports.org_release_ports_lang_
> gcc43/work/build/./prev-gcc/xgcc
> -B/opt/local/var/macports/build/
> _opt_local_var_macports_sources_rsync.macports.org_release_ports_lang_
> gcc43/work/build/./prev-gcc/
> -B/opt/local/x86_64-apple-darwin10/bin/ -c -g -O2 -DIN_GCC -W
> -Wall -Wwrite-strings -Wstrict-prototypes -Wmissing-prototypes
> -Wold-style-definition -Wmissing-format-attribute -pedantic
> -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings
> -DHAVE_CONFIG_H -I. -I. -I../../gcc-4.3.4/gcc -I../../gcc-4.3.4/gcc/.
> -I../../gcc-4.3.4/gcc/../include
> -I../../gcc-4.3.4/gcc/../libcpp/include -I/opt/local/include
> -I/opt/local/include -I../../gcc-4.3.4/gcc/../libdecnumber
> -I../../gcc-4.3.4/gcc/../libdecnumber/dpd -I../libdecnumber
> ../../gcc-4.3.4/gcc/gcov-dump.c -o gcov-dump.o
> /opt/local/var/macports/build/
> _opt_local_var_macports_sources_rsync.macports.org_release_ports_lang_
> gcc43/work/build/./prev-gcc/xgcc
> -B/opt/local/var/macports/build/
> _opt_local_var_macports_sources_rsync.macports.org_release_ports_lang_
> gcc43/work/build/./prev-gcc/
> -B/opt/local/x86_64-apple-darwin10/bin/ -g -O2 -DIN_GCC -W -Wall
> -Wwrite-strings -Wstrict-prototypes -Wmissing-prototypes
> -Wold-style-definition -Wmissing-format-attribute -pedantic
> -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings
> -DHAVE_CONFIG_H gcov.o intl.o version.o errors.o ../libcpp/libcpp.a
> ../libiberty/libiberty.a ../libdecnumber/libdecnumber.a -o gcov
> /opt/local/var/macports/build/
> _opt_local_var_macports_sources_rsync.macports.org_release_ports_lang_
> gcc43/work/build/./prev-gcc/xgcc
> -B/opt/local/var/macports/build/
> _opt_local_var_macports_sources_rsync.macports.org_release_ports_lang_
> gcc43/work/build/./prev-gcc/
> -B/opt/local/x86_64-apple-darwin10/bin/ -g -O2 -DIN_GCC -W -Wall
> -Wwrite-strings -Wstrict-prototypes -Wmissing-prototypes
> -Wold-style-definition -Wmissing-format-attribute -pedantic
> -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings
> -DHAVE_CONFIG_H gcov-dump.o version.o errors.o ../libcpp/libcpp.a
> ../libiberty/libiberty.a ../libdecnumber/libdecnumber.a -o gcov-dump
> rm -rf libbackend.a
> ar rc libbackend.a insn-attrtab.o insn-automata.o insn-emit.o
> insn-extract.o insn-modes.o insn-opinit.o insn-output.o insn-peep.o
> insn-preds.o insn-recog.o ggc-page.o alias.o alloc-pool.o
> auto-inc-dec.o bb-reorder.o bitmap.o bt-load.o builtins.o
> caller-save.o calls.o cfg.o cfganal.o cfgbuild.o cfgcleanup.o
> cfgexpand.o cfghooks.o cfglayout.o cfgloop.o cfgloopanal.o
> cfgloopmanip.o cfgrtl.o combine.o combine-stack-adj.o convert.o
> coverage.o cse.o cselib.o dbxout.o dbgcnt.o dce.o ddg.o debug.o
> df-core.o df-problems.o df-scan.o dfp.o diagnostic.o dojump.o
> dominance.o domwalk.o double-int.o dse.o dwarf2asm.o dwarf2out.o
> ebitmap.o emit-rtl.o et-forest.o except.o explow.o expmed.o expr.o
> final.o fixed-value.o fold-const.o function.o fwprop.o gcse.o genrtl.o
> ggc-common.o gimple-low.o gimplify.o global.o graph.o graphds.o
> gtype-desc.o haifa-sched.o hooks.o ifcvt.o init-regs.o integrate.o
> intl.o jump.o lambda-code.o lambda-mat.o lambda-trans.o langhooks.o
> lcm.o lists.o local-alloc.o loop-doloop.o loop-init.o loop-invariant.o
> loop-iv.o loop-unroll.o loop-unswitch.o lower-subreg.o
> mode-switching.o modulo-sched.o omega.o omp-low.o optabs.o options.o
> opts-common.o opts.o params.o passes.o pointer-set.o postreload-gcse.o
> postreload.o predict.o pretty-print.o print-rtl.o print-tree.o
> profile.o ra-conflict.o real.o recog.o reg-stack.o regclass.o
> regmove.o regrename.o regstat.o reload.o reload1.o reorg.o resource.o
> rtl-error.o rtl-factoring.o rtl.o rtlanal.o rtlhooks.o sbitmap.o
> sched-deps.o sched-ebb.o sched-rgn.o sched-vis.o sdbout.o see.o
> simplify-rtx.o sparseset.o sreal.o stack-ptr-mod.o stmt.o
> stor-layout.o stringpool.o struct-equiv.o targhooks.o timevar.o
> toplev.o tracer.o tree-affine.o tree-cfg.o tree-cfgcleanup.o
> tree-chrec.o tree-complex.o tree-data-ref.o tree-dfa.o tree-dump.o
> tree-eh.o tree-gimple.o tree-if-conv.o tree-into-ssa.o tree-iterator.o
> tree-loop-linear.o tree-nested.o tree-nrv.o tree-object-size.o
> tree-optimize.o tree-outof-ssa.o tree-parloops.o tree-phinodes.o
> tree-predcom.o tree-pretty-print.o tree-profile.o
> tree-scalar-evolution.o tree-sra.o tree-ssa-address.o tree-ssa-alias.o
> tree-ssa-alias-warnings.o tree-ssa-ccp.o tree-ssa-coalesce.o
> tree-ssa-copy.o tree-ssa-copyrename.o tree-ssa-dce.o tree-ssa-dom.o
> tree-ssa-dse.o tree-ssa-forwprop.o tree-ssa-ifcombine.o
> tree-ssa-live.o tree-ssa-loop-ch.o tree-ssa-loop-im.o
> tree-ssa-loop-ivcanon.o tree-ssa-loop-ivopts.o tree-ssa-loop-manip.o
> tree-ssa-loop-niter.o tree-ssa-loop-prefetch.o
> tree-ssa-loop-unswitch.o tree-ssa-loop.o tree-ssa-math-opts.o
> tree-ssa-operands.o tree-ssa-phiopt.o tree-ssa-pre.o
> tree-ssa-propagate.o tree-ssa-reassoc.o tree-ssa-sccvn.o
> tree-ssa-sink.o tree-ssa-structalias.o tree-ssa-ter.o
> tree-ssa-threadedge.o tree-ssa-threadupdate.o tree-ssa-uncprop.o
> tree-ssa.o tree-ssanames.o tree-stdarg.o tree-tailcall.o
> tree-vect-analyze.o tree-vect-generic.o tree-vect-patterns.o
> tree-vect-transform.o tree-vectorizer.o tree-vn.o tree-vrp.o tree.o
> value-prof.o var-tracking.o varasm.o varray.o vec.o version.o
> vmsdbgout.o web.o xcoffout.o i386.o darwin.o host-darwin.o
> host-i386-darwin.o cgraph.o cgraphbuild.o cgraphunit.o ipa-cp.o
> ipa-inline.o ipa-prop.o ipa-pure-const.o ipa-reference.o
> ipa-struct-reorg.o ipa-type-escape.o ipa-utils.o ipa.o matrix-reorg.o
> tree-inline.o tree-nomudflap.o varpool.o
> ranlib: file: libbackend.a(insn-peep.o) has no symbols
> ranlib: file: libbackend.a(loop-doloop.o) has no symbols
> ranlib: file: libbackend.a(vmsdbgout.o) has no symbols
> ranlib: file: libbackend.a(xcoffout.o) has no symbols
> ranlib -c libbackend.a
> ranlib: file: libbackend.a(insn-peep.o) has no symbols
> ranlib: file: libbackend.a(loop-doloop.o) has no symbols
> ranlib: file: libbackend.a(vmsdbgout.o) has no symbols
> ranlib: file: libbackend.a(xcoffout.o) has no symbols
> /opt/local/var/macports/build/
> _opt_local_var_macports_sources_rsync.macports.org_release_ports_lang_
> gcc43/work/build/./prev-gcc/xgcc
> -B/opt/local/var/macports/build/
> _opt_local_var_macports_sources_rsync.macports.org_release_ports_lang_
> gcc43/work/build/./prev-gcc/
> -B/opt/local/x86_64-apple-darwin10/bin/ -g -O2 -DIN_GCC -W -Wall
> -Wwrite-strings -Wstrict-prototypes -Wmissing-prototypes
> -Wold-style-definition -Wmissing-format-attribute -pedantic
> -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings
> -DHAVE_CONFIG_H -o cc1-dummy c-lang.o stub-objc.o attribs.o
> c-errors.o c-lex.o c-pragma.o c-decl.o c-typeck.o c-convert.o
> c-aux-info.o c-common.o c-opts.o c-format.o c-semantics.o c-incpath.o
> cppdefault.o c-ppoutput.o c-cppbuiltin.o prefix.o c-objc-common.o
> c-dump.o c-pch.o c-parser.o darwin-c.o c-gimplify.o tree-mudflap.o
> c-pretty-print.o c-omp.o dummy-checksum.o \
> main.o libbackend.a ../libcpp/libcpp.a
> ../libdecnumber/libdecnumber.a ../libcpp/libcpp.a
> ../libiberty/libiberty.a ../libdecnumber/libdecnumber.a
> -L/opt/local/lib -L/opt/local/lib -lmpfr -lgmp
> /opt/local/var/macports/build/
> _opt_local_var_macports_sources_rsync.macports.org_release_ports_lang_
> gcc43/work/build/./prev-gcc/xgcc
> -B/opt/local/var/macports/build/
> _opt_local_var_macports_sources_rsync.macports.org_release_ports_lang_
> gcc43/work/build/./prev-gcc/
> -B/opt/local/x86_64-apple-darwin10/bin/ -g -O2 -DIN_GCC -W -Wall
> -Wwrite-strings -Wstrict-prototypes -Wmissing-prototypes
> -Wold-style-definition -Wmissing-format-attribute -pedantic
> -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings
> -DHAVE_CONFIG_H -o cc1plus-dummy \
> cp/cp-lang.o stub-objc.o cp/call.o cp/decl.o cp/expr.o cp/pt.o
> cp/typeck2.o cp/class.o cp/decl2.o cp/error.o cp/lex.o cp/parser.o
> cp/ptree.o cp/rtti.o cp/typeck.o cp/cvt.o cp/except.o cp/friend.o
> cp/init.o cp/method.o cp/search.o cp/semantics.o cp/tree.o cp/repo.o
> cp/dump.o cp/optimize.o cp/mangle.o cp/cp-objcp-common.o
> cp/name-lookup.o cp/cxx-pretty-print.o cp/cp-gimplify.o tree-mudflap.o
> attribs.o c-common.o c-format.o c-pragma.o c-semantics.o c-lex.o
> c-dump.o darwin-c.o c-pretty-print.o c-opts.o c-pch.o c-incpath.o
> cppdefault.o c-ppoutput.o c-cppbuiltin.o prefix.o c-gimplify.o c-omp.o
> tree-inline.o dummy-checksum.o main.o libbackend.a ../libcpp/libcpp.a
> ../libdecnumber/libdecnumber.a ../libcpp/libcpp.a
> ../libiberty/libiberty.a ../libdecnumber/libdecnumber.a
> -L/opt/local/lib -L/opt/local/lib -lmpfr -lgmp
> ld: duplicate symbol _init_inline_once in libbackend.a(tree-inline.o)
> and tree-inline.o
> collect2: ld returned 1 exit status
> make[3]: *** [cc1plus-dummy] Error 1
> make[3]: *** Waiting for unfinished jobs....
> rm gfortran.pod
> make[2]: *** [all-stage2-gcc] Error 2
> make[1]: *** [stage2-bubble] Error 2
> make: *** [all] Error 2
>
> Error: The following dependencies failed to build: gcc43
> Error: Status 1 encountered during processing.
> ~ #
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> macports-users at lists.macosforge.org
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