py26-numpy build problem

[Daniel Wolk]

Dear List Members,

I errored out building py26-numpy on my PPC  Mac OS 10.4.11.  I read various
bug reports and it appears that my problem resembles previous ones, but it
looked like those other problems have been resolved.  I include the
beginning and end of my output.  I'm not much of a developer, so I do not
really know how to send a bug report.  It looks like I am missing many
libraries, but I don't know why.  I also attached the log file.

Daniel Wolk

port -vu upgrade py26-numpy
--->  Computing dependencies for py26-numpy.
--->  Fetching py26-numpy
--->  Verifying checksum(s) for py26-numpy
--->  Checksumming numpy-1.5.0.tar.gz
--->  Extracting py26-numpy
--->  Extracting numpy-1.5.0.tar.gz
/usr/bin/gnutar: Read 6144 bytes from -
--->  Applying patches to py26-numpy
--->  Applying /opt/local/var/macports/sources/
rsync.macports.org/release/ports/python/py26-numpy/files/patch-f2py_setup.py.diff
patching file numpy/f2py/setup.py
Hunk #1 succeeded at 51 (offset -1 lines).
Hunk #2 succeeded at 75 (offset -3 lines).
--->  Applying /opt/local/var/macports/sources/
rsync.macports.org/release/ports/python/py26-numpy/files/patch-system_info.py.diff
patching file numpy/distutils/system_info.py
Hunk #1 succeeded at 1250 (offset 7 lines).
Hunk #2 succeeded at 1347 (offset 7 lines).
--->  Applying /opt/local/var/macports/sources/
rsync.macports.org/release/ports/python/py26-numpy/files/patch-fcompiler_g95.diff
patching file numpy/distutils/fcompiler/__init__.py
Hunk #1 succeeded at 693 (offset 8 lines).
--->  Applying /opt/local/var/macports/sources/
rsync.macports.org/release/ports/python/py26-numpy/files/patch-numpy_linalg_setup.py.diff
patching file numpy/linalg/setup.py
--->  Configuring py26-numpy
--->  Building py26-numpy
Running from numpy source directory.non-existing path in 'numpy/distutils':
'site.cfg'
F2PY Version 1
blas_opt_info:
blas_mkl_info:
  libraries mkl,vml,guide not found in
/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib
  libraries mkl,vml,guide not found in /usr/lib
  libraries mkl,vml,guide not found in /opt/local/lib
  NOT AVAILABLE

atlas_blas_threads_info:
Setting PTATLAS=ATLAS
  libraries ptf77blas,ptcblas,atlas not found in /opt/local/lib
  libraries ptf77blas,ptcblas,atlas not found in
/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib
  libraries ptf77blas,ptcblas,atlas not found in /usr/lib
  NOT AVAILABLE

atlas_blas_info:
  FOUND:
    libraries = ['f77blas', 'cblas', 'atlas']
    library_dirs = ['/opt/local/lib']
    language = c
    include_dirs = ['/opt/local/include']

/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py26-numpy/work/numpy-1.5.0/numpy/distutils/command/config.py:397:
DeprecationWarning:
+++++++++++++++++++++++++++++++++++++++++++++++++
Usage of get_output is deprecated: please do not
use it anymore, and avoid configuration checks
involving running executable on the target machine.
+++++++++++++++++++++++++++++++++++++++++++++++++

  DeprecationWarning)
customize NAGFCompiler
Could not locate executable f95
customize AbsoftFCompiler
Could not locate executable f90
Could not locate executable f77
customize IBMFCompiler
Could not locate executable xlf90
Could not locate executable xlf
customize IntelFCompiler
Could not locate executable ifort
Could not locate executable ifc
customize GnuFCompiler
Found executable /opt/local/bin/gfortran-mp-4.4
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize Gnu95FCompiler
customize Gnu95FCompiler
customize Gnu95FCompiler using config
compiling '_configtest.c':


...............

/opt/local/bin/gfortran-mp-4.4 -Wall -Wall -undefined dynamic_lookup -bundle
build/temp.macosx-10.4-ppc-2.6/numpy/linalg/lapack_litemodule.o
build/temp.macosx-10.4-ppc-2.6/numpy/linalg/python_xerbla.o -L/opt/local/lib
-L/opt/local/lib/gcc44/gcc/ppc-apple-darwin8/4.4.5
-Lbuild/temp.macosx-10.4-ppc-2.6 -llapack -lf77blas -lcblas -latlas
-lgfortran -o build/lib.macosx-10.4-ppc-2.6/numpy/linalg/lapack_lite.so
-undefined dynamic_lookup -bundle
/usr/bin/ld: Undefined symbols:
___powisf2 referenced from liblapack expected to be defined in libgcc
___powidf2 referenced from liblapack expected to be defined in libgcc
collect2: ld returned 1 exit status
/usr/bin/ld: Undefined symbols:
___powisf2 referenced from liblapack expected to be defined in libgcc
___powidf2 referenced from liblapack expected to be defined in libgcc
collect2: ld returned 1 exit status
error: Command "/opt/local/bin/gfortran-mp-4.4 -Wall -Wall -undefined
dynamic_lookup -bundle
build/temp.macosx-10.4-ppc-2.6/numpy/linalg/lapack_litemodule.o
build/temp.macosx-10.4-ppc-2.6/numpy/linalg/python_xerbla.o -L/opt/local/lib
-L/opt/local/lib/gcc44/gcc/ppc-apple-darwin8/4.4.5
-Lbuild/temp.macosx-10.4-ppc-2.6 -llapack -lf77blas -lcblas -latlas
-lgfortran -o build/lib.macosx-10.4-ppc-2.6/numpy/linalg/lapack_lite.so
-undefined dynamic_lookup -bundle" failed with exit status 1
shell command " cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py26-numpy/work/numpy-1.5.0"
&& /opt/local/Library/Frameworks/Python.framework/Versions/2.6/bin/python2.6
setup.py --no-user-cfg build " returned error 1
Error: Target org.macports.build returned: shell command failed
Warning: the following items did not execute (for py26-numpy):
org.macports.destroot org.macports.build
Log for py26-numpy is at:
/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py26-numpy/main.log
Error: Unable to upgrade port: 1
To report a bug, see <http://guide.macports.org/#project.tickets>
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