igraph problem on Lion

Wu Degang samuelandjw at gmail.com
Mon Oct 31 20:31:29 PDT 2011


Hi,

I was trying to build igraph 0.5.4 on Lion but failed. The following is 
the error message in the terminal:

Error: Target org.macports.build returned: shell command failed (see log 
for details)
Error: Failed to install igraph
Log for igraph is at: 
/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_igraph/igraph/main.log

The following is the relevant (I think) section in the log file:

:info:build libtool: compile: /Developer/usr/bin/llvm-g++-4.2 
-DHAVE_CONFIG_H -I. -I.. -pipe -O2 -arch x86_64 
-I/opt/local/include/libxml2 -pipe -O2 -arch x86_64 -MT 
libigraph_la-gengraph_box_list.lo -MD -MP -MF 
.deps/libigraph_la-gengraph_box_list.Tpo -c gengraph_box_list.cpp -o 
libigraph_la-gengraph_box_list.o >/dev/null 2>&1
:info:build DensityGrid.cpp: In member function ‘float 
drl::DensityGrid::GetDensity(float, float, bool)’:
:info:build DensityGrid.cpp:76: internal compiler error: Segmentation 
fault: 11
:info:build Please submit a full bug report,
:info:build with preprocessed source if appropriate.
:info:build See <URL:http://developer.apple.com/bugreporter> for 
instructions.
:info:build make[3]: *** [libigraph_la-DensityGrid.lo] Error 1
:info:build make[3]: *** Waiting for unfinished jobs....
:info:build mv -f .deps/libigraph_la-gengraph_box_list.Tpo 
.deps/libigraph_la-gengraph_box_list.Plo
:info:build mv -f .deps/libigraph_la-drl_parse.Tpo 
.deps/libigraph_la-drl_parse.Plo
:info:build mv -f .deps/libigraph_la-drl_layout.Tpo 
.deps/libigraph_la-drl_layout.Plo
:info:build libtool: compile: /Developer/usr/bin/llvm-g++-4.2 
-DHAVE_CONFIG_H -I. -I.. -pipe -O2 -arch x86_64 
-I/opt/local/include/libxml2 -pipe -O2 -arch x86_64 -MT 
libigraph_la-drl_graph.lo -MD -MP -MF .deps/libigraph_la-drl_graph.Tpo 
-c drl_graph.cpp -o libigraph_la-drl_graph.o >/dev/null 2>&1
:info:build mv -f .deps/libigraph_la-drl_graph.Tpo 
.deps/libigraph_la-drl_graph.Plo
:info:build make[3]: Leaving directory 
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_igraph/igraph/work/igraph-0.5.4/src'
:info:build make[2]: *** [all] Error 2
:info:build make[2]: Leaving directory 
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_igraph/igraph/work/igraph-0.5.4/src'
:info:build make[1]: *** [all-recursive] Error 1
:info:build make[1]: Leaving directory 
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_igraph/igraph/work/igraph-0.5.4'
:info:build make: *** [all] Error 2
:info:build make: Leaving directory 
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_igraph/igraph/work/igraph-0.5.4'
:info:build shell command " cd 
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_igraph/igraph/work/igraph-0.5.4" 
&& /usr/bin/make -j5 -w all " returned error 2

It looks like there is something wrong with the source file of igraph, 
but I am not sure.

Cheers,
Wu


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