Error Upgrading Atlas

[Jasper Frumau]

I did a selfupdate and tried again. Still the same issue it seems:

UNKNOWN COMPILER '/opt/local/bin/gcc-mp-4.4' for ICC: you must also supply
flags!
make[1]: *** [atlas_run] Error 1
make: *** [IRun_comp] Error 2
Assertion failed: (!system(ln)), function ProbeComp, file
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/atlas/work/atlas-3.9.47/build/..//CONFIG/src/config.c,
line 125.

Assembly configured as GAS_x8664 (2)

Vector ISA Extension configured as  SSE3 (5,224)

Architecture configured as  Core2 (17)

Clock rate configured as 2800Mhz

Maximum number of threads configured as  2
Parallel make command configured as '$(MAKE) -j 2'
Cannot detect CPU throttling.
/bin/sh: line 1: 42827 Abort trap: 6           ./xconfig -d s
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/atlas/work/atlas-3.9.47/build/../
-d b
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/atlas/work/atlas-3.9.47/build
-C xc /opt/local/bin/gcc-mp-4.4 -C gc /opt/local/bin/gcc-mp-4.4 -C if
/opt/local/bin/gfortran-mp-4.4 -C ic /opt/local/bin/gcc-mp-4.4 -C dm
/opt/local/bin/gcc-mp-4.4 -C sm /opt/local/bin/gcc-mp-4.4 -C dk
/opt/local/bin/gcc-mp-4.4 -C sk /opt/local/bin/gcc-mp-4.4 -Si lapackref 1
-O 12 -b 64 -Fa alg -fPIC -D c -DPentiumCPS=2800 -D c -DATL_FULL_LAPACK
xconfig exited with 134
Command failed:  cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/atlas/work/atlas-3.9.47/build"
&& ../configure --prefix=/opt/local -C xc /opt/local/bin/gcc-mp-4.4 -C gc
/opt/local/bin/gcc-mp-4.4 -C if /opt/local/bin/gfortran-mp-4.4 -C ic
/opt/local/bin/gcc-mp-4.4 -C dm /opt/local/bin/gcc-mp-4.4 -C sm
/opt/local/bin/gcc-mp-4.4 -C dk /opt/local/bin/gcc-mp-4.4 -C sk
/opt/local/bin/gcc-mp-4.4 --cc=/opt/local/bin/gcc-mp-4.4
--with-netlib-lapack-tarfile=/opt/local/var/macports/distfiles/atlas/lapack-3.3.1.tgz
-O 12 -b 64 -Fa alg -fPIC -D c -DPentiumCPS=2800
Exit code: 134
Error: org.macports.configure for port atlas returned: configure failure:
command execution failed
DEBUG: Error code: NONE
DEBUG: Backtrace: configure failure: command execution failed
    while executing
"$procedure $targetname"
Warning: targets not executed for atlas: org.macports.activate
org.macports.configure org.macports.build org.macports.destroot
org.macports.install
Please see the log file for port atlas for details:

/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/atlas/main.log
Error: Problem while installing atlas
To report a bug, follow the instructions in the guide:
    http://guide.macports.org/#project.tickets




On Sat, May 19, 2012 at 5:38 PM, Vincent Habchi <vince at macports.org> wrote:

> > I fixed one port issue - iso-code registry issue - and continued
> upgrading the outdated ports. Now I got stuck at Atlas with these errors:
> >
> > UNKNOWN COMPILER '/opt/local/bin/gcc-mp-4.4' for ICC: you must also
> supply flags!
> > make[1]: *** [atlas_run] Error 1
> > make: *** [IRun_comp] Error 2
> > Assertion failed: (!system(ln)), function ProbeComp, file
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/atlas/work/atlas-3.9.47/build/..//CONFIG/src/config.c,
> line 125.
>
> […]
>
> I just upgraded to 3.9.74 in r93299. Please test again.
>
> Vincent
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