slepc problem

Gideon Simpson gideon.simpson at gmail.com
Fri Mar 8 15:50:23 PST 2013


I got the following error while trying to install slepc:

version:1
:msg:main --->  Computing dependencies for slepc:info:main .:debug:main slepc has no conflicts
:debug:main Searching for dependency: petsc
:debug:main Didn't find receipt, going to depspec regex for: petsc
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/petsc
:debug:main OS darwin/12.2.0 (Mac OS X 10.8) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/conflicts_build-1.0.tcl
:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
:debug:main universal_variant is false, so not adding the default universal variant
:debug:main Executing variant openmpi provides openmpi
:debug:main Executing variant accelerate provides accelerate
:info:main .:debug:main petsc has no conflicts
:debug:main Searching for dependency: cmake
:debug:main Found Dependency: receipt exists for cmake
:debug:main Searching for dependency: hdf5-18
:debug:main Found Dependency: receipt exists for hdf5-18
:debug:main Searching for dependency: libyaml
:debug:main Found Dependency: receipt exists for libyaml
:debug:main Searching for dependency: openmpi
:debug:main Found Dependency: receipt exists for openmpi
:msg:main 
:msg:main --->  Dependencies to be installed: petsc
:debug:main Starting logging for petsc
:debug:main Executing org.macports.main (slepc)
:debug:main changing euid/egid - current euid: 0 - current egid: 0
:debug:main egid changed to: 501
:debug:main euid changed to: 502
:debug:archivefetch archivefetch phase started at Fri Mar  8 23:48:58 GMT 2013
:msg:archivefetch --->  Fetching archive for slepc
:debug:archivefetch Executing org.macports.archivefetch (slepc)
:debug:archivefetch euid/egid changed to: 0/0
:debug:archivefetch chowned /opt/local/var/macports/incoming to macports
:debug:archivefetch euid/egid changed to: 502/501
:info:archivefetch --->  slepc-3.3-p3_0.darwin_12.x86_64.tbz2 doesn't seem to exist in /opt/local/var/macports/incoming/verified
:msg:archivefetch --->  Attempting to fetch slepc-3.3-p3_0.darwin_12.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/slepc
:debug:archivefetch Fetching archive failed:: The requested URL returned error: 404
:msg:archivefetch --->  Attempting to fetch slepc-3.3-p3_0.darwin_12.x86_64.tbz2 from http://lil.fr.packages.macports.org/slepc
:debug:archivefetch Fetching archive failed:: The requested URL returned error: 404
:msg:archivefetch --->  Attempting to fetch slepc-3.3-p3_0.darwin_12.x86_64.tbz2 from http://packages.macports.org/slepc
:debug:archivefetch Fetching archive failed:: The requested URL returned error: 404
:debug:archivefetch Privilege de-escalation not attempted as not running as root.
:debug:fetch fetch phase started at Fri Mar  8 23:48:59 GMT 2013
:notice:fetch --->  Fetching distfiles for slepc
:debug:fetch Can't run fetch on this port without elevated privileges. Escalating privileges back to root.
:debug:fetch euid changed to: 0. egid changed to: 0.
:debug:fetch changing euid/egid - current euid: 0 - current egid: 0
:debug:fetch egid changed to: 501
:debug:fetch euid changed to: 502
:debug:fetch Executing org.macports.fetch (slepc)
:info:fetch --->  slepc-3.3-p3.tar.gz doesn't seem to exist in /opt/local/var/macports/distfiles/slepc
:notice:fetch --->  Attempting to fetch slepc-3.3-p3.tar.gz from http://mse.uk.distfiles.macports.org/sites/distfiles.macports.org/slepc
:debug:fetch Privilege de-escalation not attempted as not running as root.
:debug:checksum checksum phase started at Fri Mar  8 23:49:00 GMT 2013
:notice:checksum --->  Verifying checksum(s) for slepc
:debug:checksum Executing org.macports.checksum (slepc)
:info:checksum --->  Checksumming slepc-3.3-p3.tar.gz
:debug:checksum Correct (md5) checksum for slepc-3.3-p3.tar.gz
:debug:checksum Correct (sha1) checksum for slepc-3.3-p3.tar.gz
:debug:checksum Correct (rmd160) checksum for slepc-3.3-p3.tar.gz
:debug:checksum Privilege de-escalation not attempted as not running as root.
:debug:extract extract phase started at Fri Mar  8 23:49:00 GMT 2013
:notice:extract --->  Extracting slepc
:debug:extract Executing org.macports.extract (slepc)
:info:extract --->  Extracting slepc-3.3-p3.tar.gz
:debug:extract setting option extract.args to '/opt/local/var/macports/distfiles/slepc/slepc-3.3-p3.tar.gz'
:debug:extract Environment: CPATH='/opt/local/include' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_slepc/slepc/work/.CC_PRINT_OPTIONS' LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES' MACOSX_DEPLOYMENT_TARGET='10.8'
:debug:extract Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_slepc/slepc/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/slepc/slepc-3.3-p3.tar.gz' | /usr/bin/gnutar --no-same-owner -xf -'
:debug:extract Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_slepc/slepc/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/slepc/slepc-3.3-p3.tar.gz' | /usr/bin/gnutar --no-same-owner -xf - 
:debug:extract euid/egid changed to: 0/0
:debug:extract chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_slepc/slepc/work to macports
:debug:extract euid/egid changed to: 502/501
:debug:extract Privilege de-escalation not attempted as not running as root.
:debug:patch patch phase started at Fri Mar  8 23:49:01 GMT 2013
:debug:patch Executing org.macports.patch (slepc)
:debug:patch Privilege de-escalation not attempted as not running as root.
:debug:configure configure phase started at Fri Mar  8 23:49:01 GMT 2013
:notice:configure --->  Configuring slepc
:debug:configure Using compiler 'Mac OS X clang'
:debug:configure Executing proc-pre-org.macports.configure-configure-0
:debug:configure Executing org.macports.configure (slepc)
:debug:configure Environment: CPATH='/opt/local/include' CFLAGS='-pipe -O2 -arch x86_64' CPPFLAGS='-I/opt/local/include' CXXFLAGS='-pipe -O2 -arch x86_64' LIBRARY_PATH='/opt/local/lib' MACOSX_DEPLOYMENT_TARGET='10.8' CXX='/usr/bin/clang++' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_slepc/slepc/work/.CC_PRINT_OPTIONS' F90FLAGS='-pipe -O2 -m64' LDFLAGS='-L/opt/local/lib -arch x86_64' OBJC='/usr/bin/clang' FCFLAGS='-pipe -O2 -m64' INSTALL='/usr/bin/install -c' OBJCFLAGS='-pipe -O2 -arch x86_64' FFLAGS='-pipe -O2 -m64' CC_PRINT_OPTIONS='YES' CC='/usr/bin/clang'
:debug:configure Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_slepc/slepc/work/slepc-3.3-p3" && ./configure --prefix=/opt/local --prefix=/opt/local/lib/petsc'
:debug:configure Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_slepc/slepc/work/slepc-3.3-p3" && ./configure --prefix=/opt/local --prefix=/opt/local/lib/petsc 
:info:configure Checking environment...
:info:configure Checking PETSc installation...
:info:configure ERROR: Unable to link with PETSc
:info:configure ERROR: See "arch-installed-petsc/conf/configure.log" file for details
:info:configure Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_slepc/slepc/work/slepc-3.3-p3" && ./configure --prefix=/opt/local --prefix=/opt/local/lib/petsc 
:info:configure Exit code: 1
:error:configure org.macports.configure for port slepc returned: configure failure: command execution failed
:debug:configure Error code: NONE
:debug:configure Backtrace: configure failure: command execution failed
    while executing
"$procedure $targetname"
:info:configure Warning: targets not executed for slepc: org.macports.activate org.macports.configure org.macports.build org.macports.destroot org.macports.install
:notice:configure Please see the log file for port slepc for details:
    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_slepc/slepc/main.log



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