fail to sudo install apbs

Yang Mei yang.mei at
Sun Aug 2 17:14:58 PDT 2015

I work on Mac system. It seems that I successfully install the pymol through port but when I open the Sudo pymol in terminal, I cannot change anything on the GUI. Does anyone have any idea how to make it work?

From: Ryan Schmidt <ryandesign at>
Sent: Sunday, August 2, 2015 6:28:24 PM
To: Yang Mei
Cc: MacPorts Users
Subject: Re: fail to sudo install apbs

> On Aug 2, 2015, at 5:17 PM, Yang Mei wrote:
>> Ryan Schmidt wrote:
>> On Aug 2, 2015, at 15:39, Yang Mei wrote:
>> When I try to sudo install apbs by Macports, I failed to install it. Here is the error information:
>>> -->  Computing dependencies for pymol
>>> --->  Cleaning pymol
>>> --->  Scanning binaries for linking errors
>>> --->  No broken files found.
>>>    Does anybody have idea how to fix it?
>> The output you've shown above does not indicate any error. What problem are you actually experiencing?
> I cannot open pdb file in this pymol or I don't know how to open the file there. Could you help. Thank you very much.

We should keep the conversation on the mailing list. To do that, please remember to use Reply All when you reply.

I'm sorry, I don't know how to use pymol, but maybe someone else on the list does. What have you tried so far? What happened? If you got an error message, what did it say?

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