Re: Update on Big Sur Problems
petr.2006 at centrum.cz
petr.2006 at centrum.cz
Sun Apr 18 13:13:07 UTC 2021
pmm:~ pet$ port info atlas
atlas @3.10.2_2 (math)
Variants: gcc49, [+]gcc5, mpclang37, nofortran, universal
Description: Provides a complete BLAS and LAPACK API.
ATLAS achieves performance on par with machine-specific tuned libraries.
Homepage: http://math-atlas.sourceforge.net/
Build Dependencies: gcc5
Library Dependencies: libgcc, libgcc6
Platforms: darwin
License: BSD
Maintainers: Email: vince at macports.org, GitHub: Veence
pmm:~ pet$ port rdeps atlas
The following ports are dependencies of atlas @3.10.2_2+gcc5:
gcc5
xz
libiconv
gperf
gettext
ncurses
cctools
gmp
isl18
ld64
ld64-xcode
zlib
libmpc
mpfr
gcc_select
libgcc6
isl
libgcc7
libgcc8
libgcc9
libgcc
libgcc10
pmm:~ pet$
______________________________________________________________
> Od: "Christopher Jones" <jonesc at hep.phy.cam.ac.uk>
> Komu: petr.2006 at centrum.cz
> Datum: 18.04.2021 14:34
> Předmět: Re: Update on Big Sur Problems
>
> CC: <lists at schamschula.com, macports-users at lists.macports.org, james.secan at gmail.com>
>
>So the issue is with atlas, it is forcing the use of gcc5, which will never work on M1 machines.
>
>please run
>
>port info atlas
>port rdeps atlas
>
>I am not sure why you get
>
> atlas
> gcc5
> isl18
> libgcc6
> libgcc7
> libgcc8
> libgcc9
> libgcc
> libgcc10
>
>below, as on my Intel macOS11 machine I don’t see this in the dep tree for atlas
>
>Oberon ~/Projects/MacPorts/ports > port info atlas
>atlas @3.10.2_2 (math)
>Variants: gcc49, gcc5, mpclang37, nofortran
>
>Description: Provides a complete BLAS and LAPACK API.
> ATLAS achieves performance on par with machine-specific tuned libraries.
>Homepage: http://math-atlas.sourceforge.net/
>
>Extract Dependencies: lbzip2
>Platforms: darwin
>License: BSD
>Maintainers: Email: vince at macports.org, GitHub: Veence
>Oberon ~/Projects/MacPorts/ports > port rdeps atlas
>The following ports are dependencies of atlas @3.10.2_2:
> lbzip2
>
>Are you perhaps forcing the use of a gcc5 variant in some way ?
>
>Please check trac for an existing ticket against atlas, and if it does not exist create one.
>
>In the meantime I suggest you try without using the atlas variant.
>
>Chris
>
>> On 18 Apr 2021, at 12:25 pm, <petr.2006 at centrum.cz> <petr.2006 at centrum.cz> wrote:
>>
>> Hi,
>>
>> pmm:~ pet$ port info sundials2 +atlas
>> sundials2 @2.7.0_3 (math, devel)
>> Variants: accelerate, +atlas, clang11, clangdevel, debug, doc, examples, g95, gccdevel, [+]gfortran,
>> [+]mpich, openblas, openmpi, universal
>>
>> Description: SUNDIALS consists of the following five solvers: CVODE solves initial value problems for ordinary
>> differential equation (ODE) systems. CVODES solves ODE systems and includes sensitivity analysis
>> capabilities (forward and adjoint). IDA solves initial value problems for differential-algebraic
>> equation (DAE) systems. IDAS solves DAE systems and includes sensitivity analysis capabilities
>> (forward and adjoint). KINSOL solves nonlinear algebraic systems.
>> Homepage: https://computing.llnl.gov/projects/sundials
>>
>> Build Dependencies: cmake, gcc-devel
>> Library Dependencies: SuiteSparse_KLU, libgcc-devel, mpich-default, atlas
>> Conflicts with: sundials
>> Platforms: darwin
>> License: BSD
>> Maintainers: none
>>
>> pmm:~ pet$ port rdeps sundials2 +atlas
>> The following ports are dependencies of sundials2 @2.7.0_3+atlas+gfortran+mpich:
>> cmake
>> libcxx
>> xz
>> libiconv
>> gperf
>> gettext
>> ncurses
>> curl
>> pkgconfig
>> libidn2
>> libunistring
>> perl5
>> perl5.28
>> db48
>> gdbm
>> readline
>> texinfo
>> help2man
>> p5.28-locale-gettext
>> perl5.30
>> autoconf
>> m4
>> automake
>> libtool
>> xattr
>> unzip
>> libpsl
>> python39
>> bzip2
>> expat
>> libedit
>> libffi
>> expect
>> tcl
>> dejagnu
>> openssl
>> zlib
>> sqlite3
>> python_select
>> python3_select
>> glib2
>> libxml2
>> icu
>> pcre
>> zstd
>> lz4
>> curl-ca-bundle
>> libarchive
>> lzo2
>> libuv
>> gcc-devel
>> cctools
>> gmp
>> isl
>> ld64
>> ld64-xcode
>> libmpc
>> mpfr
>> gcc_select
>> libgcc-devel
>> SuiteSparse_KLU
>> SuiteSparse_config
>> SuiteSparse_AMD
>> SuiteSparse_BTF
>> SuiteSparse_COLAMD
>> mpich-default
>> mpi_select
>> mpi-doc
>> atlas
>> gcc5
>> isl18
>> libgcc6
>> libgcc7
>> libgcc8
>> libgcc9
>> libgcc
>> libgcc10
>> pmm:~ pet$
>>
>> ps: without +atlas sundials2 installs successfully
>>
>> pmm:~ pet$ uname -a
>> Darwin pmm.local 20.3.0 Darwin Kernel Version 20.3.0: Thu Jan 21 00:06:51 PST 2021; root:xnu-7195.81.3~1/RELEASE_ARM64_T8101 arm64
>>
>> Petr
>>
>>
>> ______________________________________________________________
>>> Od: "Christopher Jones" <jonesc at hep.phy.cam.ac.uk>
>>> Komu: petr.2006 at centrum.cz
>>> Datum: 18.04.2021 13:08
>>> Předmět: Re: Update on Big Sur Problems
>>>
>>> CC: <lists at schamschula.com, macports-users at lists.macports.org, james.secan at gmail.com>
>>> Hi,
>>>
>>> Any port that forces the use of gcc10 or older on M1 macs cannot work, as these gcc versions are never going to be supported on these machines. Even gcc11 support seems unlikely at this time, so for a while gccdevel is likely going to be the only supported version on these machines, which currently uses a special fork of the gcc mainline by the primary Darwin maintainer with experimental M1 support.
>>>
>>> However, ports using the compilers PG should automatically use gccdevel, so we need to see why the port below is trying to install libgcc9, as this is incorrect. Please show what
>>>
>>> port info sundials2 +atlas
>>>
>>> and
>>>
>>> port rdeps sundials2 +atlas
>>>
>>> Finally, if you want this to get fixed you need to follow the final instructions below and submit a trac ticket for the issue.
>>>
>>> Chris
>>>
>>>> On 18 Apr 2021, at 11:40 am, petr.2006 at centrum.cz wrote:
>>>>
>>>> Hello,
>>>>
>>>> I run "sudo port selfupdate" and "sudo port upgrade outdated" occasionally and I see that there are updates and improvements. Which is nice.
>>>>
>>>> Yes, gcc-devel is pulled by default, it includes fortran and it seems to work.
>>>>
>>>> However I am experiencing problems with some packages which need other version which is ether not available for arm64 or it is conflict with gcc-devel .
>>>>
>>>> Just as an example, I tried to install cantera and it wants sundials2 +atlas
>>>> but :
>>>>
>>>> sudo port install sundials2 +atlas
>>>> Warning: The macOS 11.2 SDK does not appear to be installed. Ports may not build correctly.
>>>> Warning: You can install it as part of the Xcode Command Line Tools package by running `xcode-select --install'.
>>>> ---> Computing dependencies for sundials2
>>>> Error: Can't install libgcc9 because conflicting ports are active: libgcc-devel
>>>> Error: Follow https://guide.macports.org/#project.tickets to report a bug.
>>>> Error: Processing of port sundials2 failed
>>>>
>>>> And I am finished at this point.
>>>>
>>>> Petr
>>>>
>>>>
>>>> ______________________________________________________________
>>>>> Od: "Marius Schamschula" <lists at schamschula.com>
>>>>> Komu: "MacPorts Users" <macports-users at lists.macports.org>
>>>>> Datum: 17.04.2021 20:50
>>>>> Předmět: Re: Update on Big Sur Problems
>>>>>
>>>>> James,
>>>>>
>>>>> gcc-devel works fine on M1 macs. E.g. I’ve used it to install octave.
>>>>>
>>>>>> On Apr 17, 2021, at 1:05 PM, James Secan <james.secan at gmail.com> wrote:
>>>>>>
>>>>>> I just checked the MacPorts wiki page for Big Sur problems and noted that it hasn’t been updated for three months (at least that’s what the wiki page says). With the possibility that new M1 iMacs might show up soon can you provide a short update on where things stand vis-a-vis Big Sur and M1-based Macs? I’m most interested in where things stand on the gcc compiler package (gfortran in particular).
>>>>>>
>>>>>> Thanks.
>>>>>> Jim
>>>>>> Seattle, WA
>>>>>
>>>>> Marius
>>>>> --
>>>>> Marius Schamschula
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> Marius
>>>>> --
>>>>> Marius Schamschula
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>
>>>
>>>
>
>
>
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