[MacPorts] #37644: ccpnmr: tcl/tk 8.6 breaks spectrum rendering
MacPorts
noreply at macports.org
Fri Jan 18 07:14:55 PST 2013
#37644: ccpnmr: tcl/tk 8.6 breaks spectrum rendering
------------------------+--------------------------------
Reporter: howarth@… | Owner: macports-tickets@…
Type: defect | Status: new
Priority: Normal | Milestone:
Component: ports | Version: 2.1.2
Resolution: | Keywords:
Port: ccpnmr |
------------------------+--------------------------------
Comment (by howarth@…):
From a build on fink, we would have to provide patch for the following
files vs stock 2.2.2 if we don't utilize the autoupdate feature[[BR]]
[[BR]]
site-packages/ccpnmr/ccpnmr2.2/python/memops/gui/FileSelect.py,
site-
packages/ccpnmr/ccpnmr2.2/python/memops/format/compatibility/downgrade/v_2_1_0/General.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/AnalysisPopup.py,
site-packages/ccpnmr/ccpnmr2.2/python/grenoble/meccano/MeccanoPopup.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/core/Register.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/CopyAssignments.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/Analysis.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/core/WindowBasic.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/frames/PeakTableFrame.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/EditSpectrum.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/EditExperiment.py,
site-packages/ccpnmr/ccpnmr2.2/python/paris/aria/AriaExtendNmrFrame.py,
site-packages/ccpnmr/ccpnmr2.2/python/memops/general/Io.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/macros/ArgumentServer.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/frames/WindowFrame.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/ViewStructure.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/wrappers/Psipred.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/core/Util.py,
site-packages/ccpnmr/ccpnmr2.2/python/memops/editor/SaveProjectFrame.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/BrowseResonances.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/EditPeakLists.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/LinkSeqSpinSystems.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/NewWindow.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/EditProfiles.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/format/gui/FormatConverter.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/format/process/makeChemShiftsFromPeakLists.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/CalcHnHaCoupling.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/FollowShiftChanges.py,
site-packages/ccpnmr/ccpnmr2.2/python/memops/gui/ScrolledMatrix.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/LinkPeakLists.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/EditExperimentSeries.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/OpenSpectrum.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/CalcRates.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/core/DataAnalysisBasic.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/core/PeakBasic.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/CalcDistConstraints.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/core/AssignmentBasic.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/ViewRamachandran.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/core/MoleculeBasic.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/SecStructureGraph.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/core/ExperimentBasic.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccpnmr/eci/EntryCompletionFrame.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccpnmr/eci/IsotopeLabeling.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccpnmr/clouds/NoeMatrix.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccpnmr/clouds/NoeRelaxation.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccpnmr/clouds/MidgePopup.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/format/converters/CyanaFormat.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/format/converters/DataFormat.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccpnmr/format/general/Constants.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccpnmr/format/general/Conversion.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccp/format/pseudoPdb/coordinatesIO.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccp/format/mol2/chemCompsIO.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccp/format/xeasy/peaksIO.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccp/format/dyana/generalIO.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccp/general/Util.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/AddContourFile.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/InitRootAssignments.py,
site-packages/ccpnmr/ccpnmr2.2/python/memops/universal/Url.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/EditPeakFindParams.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/EditStructures.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/core/StructureBasic.py,
site-
packages/ccpnmr/ccpnmr2.2/python/memops/format/compatibility/upgrade/v_2_0_4/Minor.py,
site-packages/ccpnmr/ccpnmr2.2/python/cambridge/dangle/homology.tab,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/core/ConstraintBasic.py,
site-packages/ccpnmr/ccpnmr2.2/python/memops/gui/MultiWidget.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/frames/NoeDistParamsFrame.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccp/format/spectra/params/ExternalParams.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/ViewQualityReports.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/EditCalculation.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/EditSpinSystem.py,
site-packages/ccpnmr/ccpnmr2.2/python/memops/universal/Ticks.py,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Aba+msd_ccpnRef_2007-12-11-10-20-09_00015.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Aib+msd_ccpnRef_2007-12-11-10-20-09_00021.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Ala+msd_ccpnRef_2007-12-11-10-20-09_00022.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Arg+msd_ccpnRef_2007-12-11-10-20-10_00007.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Asn+msd_ccpnRef_2007-12-11-10-20-10_00013.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Asp+msd_ccpnRef_2007-12-11-10-20-10_00001.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Bmt+msd_ccpnRef_2007-12-11-10-20-11_00001.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Cgu+msd_ccpnRef_2007-12-11-10-20-11_00012.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Cso+msd_ccpnRef_2007-12-11-10-20-12_00008.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Css+msd_ccpnRef_2007-12-11-10-20-12_00011.xml,,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Cxm+msd_ccpnRef_2007-12-11-10-20-12_00017.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Cys+msd_ccpnRef_2007-12-11-10-20-13_00005.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+D_Ala+msd_ccpnRef_2007-12-11-10-20-13_00008.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+D_Pro+msd_ccpnRef_2007-12-11-10-20-14_00005.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+D_Thr+msd_ccpnRef_2007-12-11-10-20-14_00007.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+D_Trp+msd_ccpnRef_2007-12-11-10-20-14_00008.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Dha+msd_ccpnRef_2007-12-11-10-20-14_00016.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Gln+msd_ccpnRef_2007-12-11-10-20-15_00017.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Glu+msd_ccpnRef_2007-12-11-10-20-15_00018.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Gly+msd_ccpnRef_2007-12-11-10-20-15_00019.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+His+msd_ccpnRef_2007-12-11-10-20-16_00013.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Hsl+msd_ccpnRef_2007-12-11-10-20-16_00018.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Ile+msd_ccpnRef_2007-12-11-10-20-17_00003.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Kcx+msd_ccpnRef_2007-12-11-10-20-17_00009.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Leu+msd_ccpnRef_2007-12-11-10-20-17_00014.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Llp+msd_ccpnRef_2007-12-11-10-20-17_00015.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Lys+msd_ccpnRef_2007-12-11-10-20-18_00001.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Met+msd_ccpnRef_2007-12-11-10-20-19_00001.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Mle+msd_ccpnRef_2007-12-11-10-20-19_00010.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Mse+msd_ccpnRef_2007-12-11-10-20-19_00018.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Mva+msd_ccpnRef_2007-12-11-10-20-19_00022.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Nle+msd_ccpnRef_2007-12-11-10-20-20_00008.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Ocs+msd_ccpnRef_2007-12-11-10-20-20_00017.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Orn+msd_ccpnRef_2007-12-11-10-20-21_00006.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Pca+msd_ccpnRef_2007-12-11-10-20-21_00014.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Phe+msd_ccpnRef_2007-12-11-10-20-22_00003.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Pro+msd_ccpnRef_2007-12-11-10-20-22_00008.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Ptr+msd_ccpnRef_2007-12-11-10-20-22_00013.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Sar+msd_ccpnRef_2007-12-11-10-20-23_00007.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Ser+msd_ccpnRef_2007-12-11-10-20-23_00016.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Thr+msd_ccpnRef_2007-12-11-10-20-24_00014.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Trp+msd_ccpnRef_2007-12-11-10-20-25_00008.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Tyr+msd_ccpnRef_2007-12-11-10-20-26_00001.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Tys+msd_ccpnRef_2007-12-11-10-20-26_00002.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/protein+Val+msd_ccpnRef_2007-12-11-10-20-27_00001.xml,
site-packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/core/WindowDraw.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/CalcShiftDifference.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/EditMeasurementLists.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/ViewChemicalShifts.py,
isite-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/core/AssignmentAdvanced.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/SpinSystemTyping.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccp/util/Molecule.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/popups/ViewAssignment.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/format/converters/NmrDrawFormat.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/format/converters/CosmosFormat.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/format/converters/DyanaFormat.py,
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/format/converters/PseudoPdbFormat.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccp/format/nmrStar/projectIO.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccp/format/nmrStar/generalIO.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccp/format/nmrStar/orderParamIO.py,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/DNA+G11+msd_ccpnRef_2007-12-11-10-13-17_00001.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/DNA+A+msd_ccpnRef_2007-12-11-10-13-15_00001.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/DNA+A00+msd_ccpnRef_2007-12-11-10-13-15_00002.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/DNA+A11+msd_ccpnRef_2007-12-11-10-13-16_00001.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/DNA+C+msd_ccpnRef_2007-12-11-10-13-16_00002.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/DNA+C00+msd_ccpnRef_2007-12-11-10-13-16_00003.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/DNA+C11+msd_ccpnRef_2007-12-11-10-13-16_00004.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/DNA+G+msd_ccpnRef_2007-12-11-10-13-16_00005.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/DNA+G00+msd_ccpnRef_2007-12-11-10-13-16_00006.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/DNA+T+msd_ccpnRef_2007-12-11-10-13-17_00005.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/DNA+T00+msd_ccpnRef_2007-12-11-10-13-17_00006.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/DNA+T11+msd_ccpnRef_2007-12-11-10-13-17_00007.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/RNA+A+msd_ccpnRef_2007-12-11-10-13-18_00001.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/RNA+A00+msd_ccpnRef_2007-12-11-10-13-18_00002.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/RNA+A11+msd_ccpnRef_2007-12-11-10-13-18_00003.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/RNA+C+msd_ccpnRef_2007-12-11-10-13-18_00004.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/RNA+C00+msd_ccpnRef_2007-12-11-10-13-18_00005.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/RNA+C11+msd_ccpnRef_2007-12-11-10-13-18_00006.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/RNA+G+msd_ccpnRef_2007-12-11-10-13-19_00001.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/RNA+G00+msd_ccpnRef_2007-12-11-10-13-19_00002.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/RNA+G11+msd_ccpnRef_2007-12-11-10-13-19_00003.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/RNA+U+msd_ccpnRef_2007-12-11-10-13-20_00001.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/RNA+U00+msd_ccpnRef_2007-12-11-10-13-20_00002.xml,
site-
packages/ccpnmr/ccpnmr2.2/data/ccp/molecule/ChemComp/RNA+U11+msd_ccpnRef_2007-12-11-10-13-20_00003.xml,
site-packages/ccpnmr/ccpnmr2.2/python/gottingen/PalesFrame.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccp/format/cosmos/generalIO.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccp/format/cosmos/chemShiftsIO.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccp/format/cosmos/projectIO.py,
site-packages/ccpnmr/ccpnmr2.2/python/memops/gui/Scrollbar.py,
site-packages/ccpnmr/ccpnmr2.2/python/ccp/format/nmrStar/sequenceIO.py and
site-
packages/ccpnmr/ccpnmr2.2/python/ccpnmr/format/converters/NmrStarFormat.py
--
Ticket URL: <https://trac.macports.org/ticket/37644#comment:9>
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