[MacPorts] #51090: slepc @3.6.2_0 +arpack +mpich configure failure
MacPorts
noreply at macports.org
Thu Apr 7 15:28:09 PDT 2016
#51090: slepc @3.6.2_0 +arpack +mpich configure failure
------------------------+--------------------------------
Reporter: aeronova@… | Owner: macports-tickets@…
Type: defect | Status: new
Priority: Normal | Milestone:
Component: ports | Version: 2.3.4
Keywords: | Port: slepc
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Dear all,
I've got the following configuration error when I tried to build slepc
3.6.2 w/ +arpack +mpich:
{{{
---> Configuring slepc
Error: org.macports.configure for port slepc returned: configure failure:
command execution failed
Please see the log file for port slepc for details:
/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_slepc/slepc/main.log
To report a bug, follow the instructions in the guide:
http://guide.macports.org/#project.tickets
}}}
In the main.log file, the error has something to do with petsc:
{{{
:info:configure ERROR: Unable to link with PETSc
:info:configure ERROR: See "installed-arch-
macports/lib/slepc/conf/configure.log" file for details
:info:configure Command failed: cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_slepc/slepc/work/v3.6.2"
&& ./configure --prefix=/opt/local --prefix=/opt/local/lib/slepc --with-
arpack-dir=/opt/local --with-arpack-flags=-lparpack,-larpack
:info:configure Exit code: 1
}}}
In the configure.log file, I found that there are undefined symbols:
{{{
Undefined symbols for architecture x86_64:
"_get_rn_dbl_simple_mpi", referenced from:
import-atom in libpetsc.dylib
"_init_rng_simple_mpi", referenced from:
import-atom in libpetsc.dylib
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see
invocation)
makefile:2: recipe for target 'checklink' failed
gmake: *** [checklink] Error 1
ERROR: Unable to link with PETSc
}}}
I'd appreciate it if someone can help me fix this link error. FYI, the
active port of petsc is the following:
{{{
petsc
@3.6.3_2+accelerate+debug+hdf5+hwloc+hypre+ml+mpich+mumps+netcdf+parmetis+sprng+suitesparse+sundials+yaml
(active)
}}}
--
Ticket URL: <https://trac.macports.org/ticket/51090>
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