[MacPorts] #50218: Error: Failed to install doxygen

MacPorts noreply at macports.org
Tue Jan 5 06:40:03 PST 2016 

#50218: Error: Failed to install doxygen
-----------------------+-------------------
  Reporter:  justin@…  |      Owner:  css@…
      Type:  defect    |     Status:  new
  Priority:  Normal    |  Milestone:
 Component:  ports     |    Version:  2.3.4
Resolution:            |   Keywords:
      Port:  doxygen   |
-----------------------+-------------------
Description changed by mf2k@…:

Old description:

> I'm new to mac and linux- any help would be appreciated.  My OS isEl
> Capitan Here is the error I get
>
> Error: org.macports.configure for port doxygen returned: configure
> failure: command execution failed
> Error: Failed to install doxygen
> Please see the log file for port doxygen for details:
>
> Here is the log.
>
> version:1
> :debug:main Attempting ln -sf
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/work
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/doxygen/work
> :debug:main changing euid/egid - current euid: 0 - current egid: 0
> :debug:main egid changed to: 501
> :debug:main euid changed to: 502
> :debug:main Executing org.macports.main (doxygen)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:main Skipping completed org.macports.archivefetch (doxygen)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:main Skipping completed org.macports.fetch (doxygen)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:main Skipping completed org.macports.checksum (doxygen)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:main Skipping completed org.macports.extract (doxygen)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:main Skipping completed org.macports.patch (doxygen)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:configure configure phase started at Mon Jan  4 20:28:44 EST 2016
> :notice:configure --->  Configuring doxygen
> :debug:configure Using compiler 'Xcode Clang'
> :debug:configure Executing proc-pre-org.macports.configure-configure-0
> :debug:configure Executing proc-pre-org.macports.configure-configure-1
> :debug:configure Executing proc-pre-org.macports.configure-configure-2
> :debug:configure Executing org.macports.configure (doxygen)
> :debug:configure Environment:
> CC='/usr/bin/clang'
> CC_PRINT_OPTIONS='YES'
> CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/work/.CC_PRINT_OPTIONS'
> CFLAGS='-pipe -Os'
> CPATH='/opt/local/include'
> CPPFLAGS='-I/opt/local/include'
> CXX='/usr/bin/clang++'
> CXXFLAGS='-pipe -Os -stdlib=libc++'
> F77FLAGS='-m64'
> F90FLAGS='-pipe -Os -m64'
> FCFLAGS='-pipe -Os -m64'
> FFLAGS='-pipe -Os'
> INSTALL='/usr/bin/install -c'
> LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names'
> LIBRARY_PATH='/opt/local/lib'
> MACOSX_DEPLOYMENT_TARGET='10.11'
> OBJC='/usr/bin/clang'
> OBJCFLAGS='-pipe -Os'
> OBJCXX='/usr/bin/clang++'
> OBJCXXFLAGS='-pipe -Os -stdlib=libc++'
> :debug:configure Assembled command: 'cd
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/work/doxygen-1.8.10"
> && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local
> -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON
> -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON
> -DCMAKE_INSTALL_RPATH=/opt/local/lib
> -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib
> -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr"
> -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules
> -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG"
> -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="x86_64"
> -DCMAKE_OSX_DEPLOYMENT_TARGET="10.11" -DCMAKE_OSX_SYSROOT="/"
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/work/doxygen-1.8.10'
> :debug:configure Executing command line:  cd
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/work/doxygen-1.8.10"
> && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local
> -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON
> -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON
> -DCMAKE_INSTALL_RPATH=/opt/local/lib
> -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib
> -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr"
> -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules
> -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG"
> -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="x86_64"
> -DCMAKE_OSX_DEPLOYMENT_TARGET="10.11" -DCMAKE_OSX_SYSROOT="/"
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/work/doxygen-1.8.10
> :info:configure -- Could NOT find Threads (missing:  Threads_FOUND)
> :info:configure CMake Error at cmake/FindIconv.cmake:121 (MESSAGE):
> :info:configure   Unable to determine iconv() signature
> :info:configure Call Stack (most recent call first):
> :info:configure   CMakeLists.txt:64 (find_package)
> :info:configure
> :info:configure
> :info:configure -- Configuring incomplete, errors occurred!
> :info:configure See also
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/work/doxygen-1.8.10/CMakeFiles/CMakeOutput.log".
> :info:configure See also
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/work/doxygen-1.8.10/CMakeFiles/CMakeError.log".
> :info:configure Command failed:  cd
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/work/doxygen-1.8.10"
> && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local
> -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON
> -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON
> -DCMAKE_INSTALL_RPATH=/opt/local/lib
> -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib
> -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr"
> -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules
> -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG"
> -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="x86_64"
> -DCMAKE_OSX_DEPLOYMENT_TARGET="10.11" -DCMAKE_OSX_SYSROOT="/"
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/work/doxygen-1.8.10
> :info:configure Exit code: 1
> :error:configure org.macports.configure for port doxygen returned:
> configure failure: command execution failed
> :debug:configure Error code: NONE
> :debug:configure Backtrace: configure failure: command execution failed
>     while executing
> "portconfigure::configure_main org.macports.configure"
>     ("eval" body line 1)
>     invoked from within
> "eval $procedure $targetname"
> :info:configure Warning: targets not executed for doxygen:
> org.macports.activate org.macports.configure org.macports.build
> org.macports.destroot org.macports.install
> :error:configure Failed to install doxygen
> :debug:configure Registry error: getopt not registered as installed &
> active.
>     invoked from within
> "registry_active $subport"
>     invoked from within
> "$workername eval registry_active \$subport"
> :notice:configure Please see the log file for port doxygen for details:
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/main.log

New description:

 I'm new to mac and linux- any help would be appreciated.  My OS isEl
 Capitan Here is the error I get

 {{{
 Error: org.macports.configure for port doxygen returned: configure
 failure: command execution failed
 Error: Failed to install doxygen
 Please see the log file for port doxygen for details:
 }}}

 Here is the log.

 {{{
 version:1
 :debug:main Attempting ln -sf
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/work
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/doxygen/work
 :debug:main changing euid/egid - current euid: 0 - current egid: 0
 :debug:main egid changed to: 501
 :debug:main euid changed to: 502
 :debug:main Executing org.macports.main (doxygen)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.archivefetch (doxygen)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.fetch (doxygen)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.checksum (doxygen)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.extract (doxygen)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.patch (doxygen)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:configure configure phase started at Mon Jan  4 20:28:44 EST 2016
 :notice:configure --->  Configuring doxygen
 :debug:configure Using compiler 'Xcode Clang'
 :debug:configure Executing proc-pre-org.macports.configure-configure-0
 :debug:configure Executing proc-pre-org.macports.configure-configure-1
 :debug:configure Executing proc-pre-org.macports.configure-configure-2
 :debug:configure Executing org.macports.configure (doxygen)
 :debug:configure Environment:
 CC='/usr/bin/clang'
 CC_PRINT_OPTIONS='YES'
 CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/work/.CC_PRINT_OPTIONS'
 CFLAGS='-pipe -Os'
 CPATH='/opt/local/include'
 CPPFLAGS='-I/opt/local/include'
 CXX='/usr/bin/clang++'
 CXXFLAGS='-pipe -Os -stdlib=libc++'
 F77FLAGS='-m64'
 F90FLAGS='-pipe -Os -m64'
 FCFLAGS='-pipe -Os -m64'
 FFLAGS='-pipe -Os'
 INSTALL='/usr/bin/install -c'
 LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names'
 LIBRARY_PATH='/opt/local/lib'
 MACOSX_DEPLOYMENT_TARGET='10.11'
 OBJC='/usr/bin/clang'
 OBJCFLAGS='-pipe -Os'
 OBJCXX='/usr/bin/clang++'
 OBJCXXFLAGS='-pipe -Os -stdlib=libc++'
 :debug:configure Assembled command: 'cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/work/doxygen-1.8.10"
 && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local
 -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON
 -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON
 -DCMAKE_INSTALL_RPATH=/opt/local/lib
 -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib
 -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr"
 -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules
 -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG"
 -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="x86_64"
 -DCMAKE_OSX_DEPLOYMENT_TARGET="10.11" -DCMAKE_OSX_SYSROOT="/"
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/work/doxygen-1.8.10'
 :debug:configure Executing command line:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/work/doxygen-1.8.10"
 && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local
 -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON
 -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON
 -DCMAKE_INSTALL_RPATH=/opt/local/lib
 -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib
 -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr"
 -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules
 -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG"
 -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="x86_64"
 -DCMAKE_OSX_DEPLOYMENT_TARGET="10.11" -DCMAKE_OSX_SYSROOT="/"
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/work/doxygen-1.8.10
 :info:configure -- Could NOT find Threads (missing:  Threads_FOUND)
 :info:configure CMake Error at cmake/FindIconv.cmake:121 (MESSAGE):
 :info:configure   Unable to determine iconv() signature
 :info:configure Call Stack (most recent call first):
 :info:configure   CMakeLists.txt:64 (find_package)
 :info:configure
 :info:configure
 :info:configure -- Configuring incomplete, errors occurred!
 :info:configure See also
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/work/doxygen-1.8.10/CMakeFiles/CMakeOutput.log".
 :info:configure See also
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/work/doxygen-1.8.10/CMakeFiles/CMakeError.log".
 :info:configure Command failed:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/work/doxygen-1.8.10"
 && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local
 -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON
 -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON
 -DCMAKE_INSTALL_RPATH=/opt/local/lib
 -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib
 -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr"
 -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules
 -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG"
 -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="x86_64"
 -DCMAKE_OSX_DEPLOYMENT_TARGET="10.11" -DCMAKE_OSX_SYSROOT="/"
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/work/doxygen-1.8.10
 :info:configure Exit code: 1
 :error:configure org.macports.configure for port doxygen returned:
 configure failure: command execution failed
 :debug:configure Error code: NONE
 :debug:configure Backtrace: configure failure: command execution failed
     while executing
 "portconfigure::configure_main org.macports.configure"
     ("eval" body line 1)
     invoked from within
 "eval $procedure $targetname"
 :info:configure Warning: targets not executed for doxygen:
 org.macports.activate org.macports.configure org.macports.build
 org.macports.destroot org.macports.install
 :error:configure Failed to install doxygen
 :debug:configure Registry error: getopt not registered as installed &
 active.
     invoked from within
 "registry_active $subport"
     invoked from within
 "$workername eval registry_active \$subport"
 :notice:configure Please see the log file for port doxygen for details:
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_doxygen/doxygen/main.log
 }}}

--

-- 
Ticket URL: <https://trac.macports.org/ticket/50218#comment:2>
MacPorts <https://www.macports.org/>
Ports system for OS X

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