[MacPorts] #67490: numpy fails to load with blis installed, need a fix with install_name_tool

MacPorts noreply at macports.org
Wed May 24 09:04:20 UTC 2023


#67490: numpy fails to load with blis installed, need a fix with install_name_tool
--------------------------+----------------------------
 Reporter:  barracuda156  |      Owner:  catap
     Type:  defect        |     Status:  assigned
 Priority:  Normal        |  Milestone:
Component:  ports         |    Version:  2.8.1
 Keywords:                |       Port:  py-numpy, blis
--------------------------+----------------------------
 Error looks like this:
 {{{
 copying lib/matplotlib/mpl-data/images/subplots-symbolic.svg ->
 build/lib.macosx-10.6-ppc-cpython-311/matplotlib/mpl-data/images
 running build_ext
 Traceback (most recent call last):
   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11
 /site-packages/numpy/core/__init__.py", line 23, in <module>
     from . import multiarray
   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11
 /site-packages/numpy/core/multiarray.py", line 10, in <module>
     from . import overrides
   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11
 /site-packages/numpy/core/overrides.py", line 6, in <module>
     from numpy.core._multiarray_umath import (
 ImportError:
 dlopen(/opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11
 /site-packages/numpy/core/_multiarray_umath.cpython-311-darwin.so, 2):
 Library not loaded: @rpath/libblis.4.dylib
   Referenced from:
 /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11
 /site-packages/numpy/core/_multiarray_umath.cpython-311-darwin.so
   Reason: image not found

 During handling of the above exception, another exception occurred:

 Traceback (most recent call last):
   File
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_python_py-
 matplotlib/py311-matplotlib/work/matplotlib-3.5.3/setup.py", line 273, in
 <module>
     setup(  # Finally, pass this all along to setuptools to do the heavy
 lifting.
   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11
 /site-packages/setuptools/__init__.py", line 107, in setup
     return distutils.core.setup(**attrs)
            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11
 /site-packages/setuptools/_distutils/core.py", line 185, in setup
     return run_commands(dist)
            ^^^^^^^^^^^^^^^^^^
   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11
 /site-packages/setuptools/_distutils/core.py", line 201, in run_commands
     dist.run_commands()
   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11
 /site-packages/setuptools/_distutils/dist.py", line 969, in run_commands
     self.run_command(cmd)
   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11
 /site-packages/setuptools/dist.py", line 1244, in run_command
     super().run_command(command)
   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11
 /site-packages/setuptools/_distutils/dist.py", line 988, in run_command
     cmd_obj.run()
   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11
 /site-packages/setuptools/_distutils/command/build.py", line 131, in run
     self.run_command(cmd_name)
   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11
 /site-packages/setuptools/_distutils/cmd.py", line 318, in run_command
     self.distribution.run_command(command)
   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11
 /site-packages/setuptools/dist.py", line 1244, in run_command
     super().run_command(command)
   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11
 /site-packages/setuptools/_distutils/dist.py", line 987, in run_command
     cmd_obj.ensure_finalized()
   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11
 /site-packages/setuptools/_distutils/cmd.py", line 111, in
 ensure_finalized
     self.finalize_options()
   File
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_python_py-
 matplotlib/py311-matplotlib/work/matplotlib-3.5.3/setup.py", line 78, in
 finalize_options
     self.distribution.ext_modules[:] = [
                                        ^
   File
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_python_py-
 matplotlib/py311-matplotlib/work/matplotlib-3.5.3/setup.py", line 78, in
 <listcomp>
     self.distribution.ext_modules[:] = [
                                        ^
   File
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_python_py-
 matplotlib/py311-matplotlib/work/matplotlib-3.5.3/setupext.py", line 393,
 in get_extensions
     add_numpy_flags(ext)
   File
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_python_py-
 matplotlib/py311-matplotlib/work/matplotlib-3.5.3/setupext.py", line 521,
 in add_numpy_flags
     import numpy as np
   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11
 /site-packages/numpy/__init__.py", line 141, in <module>
     from . import core
   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11
 /site-packages/numpy/core/__init__.py", line 49, in <module>
     raise ImportError(msg)
 ImportError:

 IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!

 Importing the numpy C-extensions failed. This error can happen for
 many reasons, often due to issues with your setup or how NumPy was
 installed.

 We have compiled some common reasons and troubleshooting tips at:

     https://numpy.org/devdocs/user/troubleshooting-importerror.html

 Please note and check the following:

   * The Python version is: Python3.11 from
 "/opt/local/Library/Frameworks/Python.framework/Versions/3.11/bin/python3.11"
   * The NumPy version is: "1.24.1"

 and make sure that they are the versions you expect.
 Please carefully study the documentation linked above for further help.

 Original error was:
 dlopen(/opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11
 /site-packages/numpy/core/_multiarray_umath.cpython-311-darwin.so, 2):
 Library not loaded: @rpath/libblis.4.dylib
   Referenced from:
 /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11
 /site-packages/numpy/core/_multiarray_umath.cpython-311-darwin.so
   Reason: image not found

 Command failed:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_python_py-
 matplotlib/py311-matplotlib/work/matplotlib-3.5.3" &&
 /opt/local/Library/Frameworks/Python.framework/Versions/3.11/bin/python3.11
 setup.py --no-user-cfg build
 Exit code: 1
 }}}

 I have found this:
 https://github.com/numpy/numpy/issues/14180
 https://github.com/spack/spack/pull/12869

-- 
Ticket URL: <https://trac.macports.org/ticket/67490>
MacPorts <https://www.macports.org/>
Ports system for macOS


More information about the macports-tickets mailing list