[MacPorts] #70012: R-Bayesrel fails to build: Symbol not found: _alloc_mat

Fri May 17 18:41:41 UTC 2024

#70012: R-Bayesrel fails to build: Symbol not found: _alloc_mat
--------------------------+--------------------------
 Reporter:  barracuda156  |      Owner:  barracuda156
     Type:  defect        |     Status:  assigned
 Priority:  Normal        |  Milestone:
Component:  ports         |    Version:  2.9.3
 Keywords:                |       Port:  R-Bayesrel
--------------------------+--------------------------
 {{{
 --->  Configuring R-Bayesrel
 Executing:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/Bayesrel" && /opt/local/bin/R CMD build . --no-
 manual --no-build-vignettes --keep-empty-dirs
 * checking for file ‘./DESCRIPTION’ ... OK
 * preparing ‘Bayesrel’:
 * checking DESCRIPTION meta-information ... OK
 * cleaning src
 * running ‘cleanup’
 * installing the package to process help pages
       -----------------------------------
 * installing *source* package ‘Bayesrel’ ...
 file ‘build/partial.rdb’ is missing
 file ‘src/Csdp/lib/Makefile’ has the wrong MD5 checksum
 ** using staged installation
 Using bundled CSDP
 checking for gcc... /opt/local/bin/gcc-mp-13
 checking whether the C compiler works... yes
 checking for C compiler default output file name... a.out
 checking for suffix of executables...
 checking whether we are cross compiling... no
 checking for suffix of object files... o
 checking whether we are using the GNU C compiler... yes
 checking whether /opt/local/bin/gcc-mp-13 accepts -g... yes
 checking for /opt/local/bin/gcc-mp-13 option to accept ISO C89... none
 needed
 checking how to run the C preprocessor... /opt/local/bin/gcc-mp-13 -E
 checking whether we are using the GNU C++ compiler... yes
 checking whether /opt/local/bin/g++-mp-13 -std=gnu++17 accepts -g... yes
 checking how to run the C++ preprocessor... /opt/local/bin/g++-mp-13
 -std=gnu++17 -E
 checking whether we are using the GNU C++ compiler... (cached) yes
 checking whether /opt/local/bin/g++-mp-13 -std=gnu++17 accepts -g...
 (cached) yes
 configure: creating ./config.status
 config.status: creating src/Makevars
 ** libs
 using C++ compiler: ‘g++-mp-13 (MacPorts gcc13 13.2.0_4+stdlib_flag)
 13.2.0’
 Warning in system2("xcrun", "--show-sdk-path", TRUE, TRUE) :
   running command ''xcrun' --show-sdk-path 2>&1' had status 64
 using SDK: ‘NA’‘NA’‘NA’‘NA’‘NA’‘NA’
 /opt/local/bin/g++-mp-13 -std=gnu++17
 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
 -ICsdp/include -DNOSHORTS -DARMA_NO_DEBUG=1
 -DARMA_DONT_USE_FORTRAN_HIDDEN_ARGS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -isystem/opt/local/include/LegacySupport -I/opt/local/include    -fPIC
 -pipe -Os -arch ppc   -c BayesrelCpp.cpp -o BayesrelCpp.o
 /opt/local/bin/g++-mp-13 -std=gnu++17
 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
 -ICsdp/include -DNOSHORTS -DARMA_NO_DEBUG=1
 -DARMA_DONT_USE_FORTRAN_HIDDEN_ARGS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -isystem/opt/local/include/LegacySupport -I/opt/local/include    -fPIC
 -pipe -Os -arch ppc   -c LowBoundsCpp.cpp -o LowBoundsCpp.o
 /opt/local/bin/g++-mp-13 -std=gnu++17
 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
 -ICsdp/include -DNOSHORTS -DARMA_NO_DEBUG=1
 -DARMA_DONT_USE_FORTRAN_HIDDEN_ARGS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -isystem/opt/local/include/LegacySupport -I/opt/local/include    -fPIC
 -pipe -Os -arch ppc   -c RcppExports.cpp -o RcppExports.o
 /opt/local/bin/g++-mp-13 -std=gnu++17
 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
 -ICsdp/include -DNOSHORTS -DARMA_NO_DEBUG=1
 -DARMA_DONT_USE_FORTRAN_HIDDEN_ARGS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -isystem/opt/local/include/LegacySupport -I/opt/local/include    -fPIC
 -pipe -Os -arch ppc   -c convertCpp.cpp -o convertCpp.o
 /opt/local/bin/g++-mp-13 -std=gnu++17
 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
 -ICsdp/include -DNOSHORTS -DARMA_NO_DEBUG=1
 -DARMA_DONT_USE_FORTRAN_HIDDEN_ARGS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -isystem/opt/local/include/LegacySupport -I/opt/local/include    -fPIC
 -pipe -Os -arch ppc   -c customsdpCpp.cpp -o customsdpCpp.o
 /opt/local/bin/g++-mp-13 -std=gnu++17
 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
 -ICsdp/include -DNOSHORTS -DARMA_NO_DEBUG=1
 -DARMA_DONT_USE_FORTRAN_HIDDEN_ARGS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -isystem/opt/local/include/LegacySupport -I/opt/local/include    -fPIC
 -pipe -Os -arch ppc   -c initArma.cpp -o initArma.o
 /opt/local/bin/g++-mp-13 -std=gnu++17
 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
 -ICsdp/include -DNOSHORTS -DARMA_NO_DEBUG=1
 -DARMA_DONT_USE_FORTRAN_HIDDEN_ARGS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -isystem/opt/local/include/LegacySupport -I/opt/local/include    -fPIC
 -pipe -Os -arch ppc   -c pfaCpp.cpp -o pfaCpp.o
 (cd Csdp/lib && \
         (make libsdp.a CC="/opt/local/bin/gcc-mp-13"
 CFLAGS="-DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include" AR="ar"
 RANLIB="ranlib") && \
         touch Csdp.ts)
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 readprob.o readprob.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o sdp.o
 sdp.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 op_o.o op_o.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 psd_feas.o psd_feas.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 op_a.o op_a.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 op_at.o op_at.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 Fnorm.o Fnorm.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 calc_pobj.o calc_pobj.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 calc_dobj.o calc_dobj.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 trace_prod.o trace_prod.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 zero_mat.o zero_mat.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 mat_mult.o mat_mult.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 sym_mat.o sym_mat.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 copy_mat.o copy_mat.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 addscaledmat.o addscaledmat.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 user_exit.o user_exit.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 make_i.o make_i.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 allocmat.o allocmat.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 initsoln.o initsoln.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 initparams.o initparams.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 add_mat.o add_mat.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 writesol.o writesol.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 readsol.o readsol.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 easysdp.o easysdp.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 writeprob.o writeprob.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 solvesys.o solvesys.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 makefill.o makefill.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 mat_multsp.o mat_multsp.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 norms.o norms.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 linesearch.o linesearch.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 matvec.o matvec.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 chol.o chol.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 qreig.o qreig.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 tweakgap.o tweakgap.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 freeprob.o freeprob.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 packed.o packed.c
 /opt/local/bin/gcc-mp-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/Rcpp/include'
 -I'/opt/local/Library/Frameworks/R.framework/Versions/4.4/Resources/library/RcppArmadillo/include'
 -pipe -Os -arch ppc  -fPIC -DNOSHORTS -I../include
 -isystem/opt/local/include/LegacySupport -I/opt/local/include  -c -o
 sortentries.o sortentries.c
 ar crs libsdp.a  readprob.o sdp.o op_o.o psd_feas.o op_a.o op_at.o
 Fnorm.o calc_pobj.o calc_dobj.o trace_prod.o zero_mat.o mat_mult.o
 sym_mat.o copy_mat.o addscaledmat.o  user_exit.o make_i.o allocmat.o
 initsoln.o initparams.o add_mat.o writesol.o readsol.o easysdp.o
 writeprob.o solvesys.o makefill.o mat_multsp.o norms.o linesearch.o
 matvec.o chol.o qreig.o tweakgap.o freeprob.o packed.o sortentries.o
 /opt/local/bin/g++-mp-13 -std=gnu++17 -dynamiclib
 -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module
 -multiply_defined suppress
 -L/opt/local/Library/Frameworks/R.framework/Resources/lib
 -Wl,-headerpad_max_install_names -L/opt/local/lib -lMacportsLegacySupport
 -Wl,-rpath,/opt/local/lib/libgcc -arch ppc -o Bayesrel.so BayesrelCpp.o
 LowBoundsCpp.o RcppExports.o convertCpp.o customsdpCpp.o initArma.o
 pfaCpp.o -LCsdp/lib -lsdp
 -L/opt/local/Library/Frameworks/R.framework/Resources/lib -lRlapack
 -L/opt/local/Library/Frameworks/R.framework/Resources/lib -lRblas
 -lMacportsLegacySupport -lgfortran -lef_ppc -lm
 -F/opt/local/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
 -Wl,CoreFoundation
 installing to
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs
 ** R
 ** data
 *** moving datasets to lazyload DB
 ** inst
 ** byte-compile and prepare package for lazy loading
 ** help
 Loading required namespace: Bayesrel
 Failed with error:  ‘unable to load shared object
 '/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so':
 dlopen(/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so, 6): Symbol not found: _alloc_mat
   Referenced from:
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so
   Expected in: dynamic lookup
 ’
 Loading required namespace: Bayesrel
 Failed with error:  ‘unable to load shared object
 '/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so':
 dlopen(/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so, 6): Symbol not found: _alloc_mat
   Referenced from:
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so
   Expected in: dynamic lookup
 ’
 Loading required namespace: Bayesrel
 Failed with error:  ‘unable to load shared object
 '/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so':
 dlopen(/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so, 6): Symbol not found: _alloc_mat
   Referenced from:
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so
   Expected in: dynamic lookup
 ’
 Loading required namespace: Bayesrel
 Failed with error:  ‘unable to load shared object
 '/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so':
 dlopen(/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so, 6): Symbol not found: _alloc_mat
   Referenced from:
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so
   Expected in: dynamic lookup
 ’
 Loading required namespace: Bayesrel
 Failed with error:  ‘unable to load shared object
 '/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so':
 dlopen(/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so, 6): Symbol not found: _alloc_mat
   Referenced from:
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so
   Expected in: dynamic lookup
 ’
 Loading required namespace: Bayesrel
 Failed with error:  ‘unable to load shared object
 '/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so':
 dlopen(/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so, 6): Symbol not found: _alloc_mat
   Referenced from:
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so
   Expected in: dynamic lookup
 ’
 Loading required namespace: Bayesrel
 Failed with error:  ‘unable to load shared object
 '/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so':
 dlopen(/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so, 6): Symbol not found: _alloc_mat
   Referenced from:
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so
   Expected in: dynamic lookup
 ’
 Loading required namespace: Bayesrel
 Failed with error:  ‘unable to load shared object
 '/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so':
 dlopen(/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so, 6): Symbol not found: _alloc_mat
   Referenced from:
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so
   Expected in: dynamic lookup
 ’
 Loading required namespace: Bayesrel
 Failed with error:  ‘unable to load shared object
 '/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so':
 dlopen(/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so, 6): Symbol not found: _alloc_mat
   Referenced from:
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so
   Expected in: dynamic lookup
 ’
 Loading required namespace: Bayesrel
 Failed with error:  ‘unable to load shared object
 '/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so':
 dlopen(/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so, 6): Symbol not found: _alloc_mat
   Referenced from:
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so
   Expected in: dynamic lookup
 ’
 Loading required namespace: Bayesrel
 Failed with error:  ‘unable to load shared object
 '/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so':
 dlopen(/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so, 6): Symbol not found: _alloc_mat
   Referenced from:
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so
   Expected in: dynamic lookup
 ’
 *** installing help indices
 ** building package indices
 ** testing if installed package can be loaded from temporary location
 Error: package or namespace load failed for ‘Bayesrel’ in dyn.load(file,
 DLLpath = DLLpath, ...):
  unable to load shared object
 '/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so':
 dlopen(/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so, 6): Symbol not found: _alloc_mat
   Referenced from:
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/00LOCK-
 Bayesrel/00new/Bayesrel/libs/Bayesrel.so
   Expected in: dynamic lookup

 Error: loading failed
 Execution halted
 ERROR: loading failed
 * removing
 ‘/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/.tmp/Rtmpejdz30/Rinstf32110e319b4/Bayesrel’
       -----------------------------------
 ERROR: package installation failed
 Command failed:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_macports_release_tarballs_ports_R_R-
 Bayesrel/R-Bayesrel/work/Bayesrel" && /opt/local/bin/R CMD build . --no-
 manual --no-build-vignettes --keep-empty-dirs
 Exit code: 1
 }}}

-- 
Ticket URL: <https://trac.macports.org/ticket/70012>
MacPorts <https://www.macports.org/>
Ports system for macOS