Macports, mri ports problem with AFNI...
David Perlman
dperlman at wisc.edu
Mon Sep 8 11:10:04 PDT 2008
Hello all, I'm new to this list but I've been successfully using afni
installed and updated with macports for a couple of years now.
However, earlier this year I tried to update afni and ever since then
I haven't been able to get any version to install successfully with
macports. I'm getting errors on port install afni, afni-latest, or
afni-devel. I have Xcode 3.0, OS X 10.5.4 with all updates. I've
done port clean --all and port uninstall and port selfupdate and
update_jb_ports.sh and everything I can think of, but I get this huge
mess of errors:
gratitude:~ omgoleus$ sudo nice port clean --all afni-devel
---> Cleaning afni-devel
gratitude:~ omgoleus$ sudo nice port install afni-devel
---> Fetching afni-devel
---> Attempting to fetch afni_src.tgz from http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/2008.05.19.0803/
---> Attempting to fetch afni.1 from http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/2008.05.19.0803/
---> Attempting to fetch 3dClustBust.c from http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/2008.05.19.0803/
---> Attempting to fetch TTatlas+tlrc.BRIK.gz from http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/2008.05.19.0803/
---> Attempting to fetch TTatlas+tlrc.HEAD from http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/2008.05.19.0803/
---> Attempting to fetch CA_EZ_v1.5-July3107.tgz from http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/2008.05.19.0803/
---> Attempting to fetch libGLw.a.tiger from http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/2008.05.19.0803/
---> Verifying checksum(s) for afni-devel
---> Extracting afni-devel
---> Applying patches to afni-devel
---> Configuring afni-devel
---> Building afni-devel with target vastness
Error: Target org.macports.build returned: shell command " cd "/opt/
local/var/macports/build/_opt_local_MacPorts_MRI_science_afni-devel/
work/afni_src" && make vastness " returned error 2
Command output: cc -march=pentium-m -mtune=prescott -DDARWIN -
Wcomment -Wformat -DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -
DDONT_USE_MCW_MALLOC -O -I.. -O -I/usr/X11R6/include -I./ -I../ -Igts/
src -I/opt/local/include -I../nifti/niftilib -I../nifti/nifticdf -I../
nifti/znzlib -I../3DEdge/src -c -o glut_menu.o glut_menu.c
... [a hundred or so similar lines deleted]
cc -march=pentium-m -mtune=prescott -DDARWIN -Wcomment -Wformat -
DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -DDONT_USE_MCW_MALLOC -O -
DSUMA_COMPILED -I/usr/X11R6/include -I./ -I../ -Igts/src -I/opt/
local/include -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/
znzlib -I../3DEdge/src -c SUMA_trackball.c
In file included from SUMA_trackball.c:1:
SUMA_suma.h:100:60: error: GL/GLwDrawA.h: No such file or directory
make[1]: *** [SUMA_trackball.o] Error 1
cp: SUMA/libSUMA.a: No such file or directory
cp: SUMA/libSUMA.a: No such file or directory
make: *** [libSUMA.a] Error 1
Error: Status 1 encountered during processing.
gratitude:~ omgoleus$
----
The errors are slightly different depending on whether I try afni,
afni-latest, or afni-devel. Google search found a message from
someone a couple months ago on this list, but I didn't see any replies
at all. I just subscribed here in hopes that there will be some
answer now!
Thanks in advance for any help you can offer.
--
-dave----------------------------------------------------------------
Where does the deep and philosophical begin, and where does the
loony and preposterous end? -Salvador Dalí
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