Macports, mri ports problem with AFNI...

David Perlman dperlman at wisc.edu
Mon Sep 8 11:10:04 PDT 2008


Hello all, I'm new to this list but I've been successfully using afni  
installed and updated with macports for a couple of years now.   
However, earlier this year I tried to update afni and ever since then  
I haven't been able to get any version to install successfully with  
macports.  I'm getting errors on port install afni, afni-latest, or  
afni-devel.  I have Xcode 3.0, OS X 10.5.4 with all updates.  I've  
done port clean --all and port uninstall and port selfupdate and  
update_jb_ports.sh and everything I can think of, but I get this huge  
mess of errors:


gratitude:~ omgoleus$ sudo nice port clean --all afni-devel
--->  Cleaning afni-devel
gratitude:~ omgoleus$ sudo nice port install afni-devel
--->  Fetching afni-devel
--->  Attempting to fetch afni_src.tgz from http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/2008.05.19.0803/
--->  Attempting to fetch afni.1 from http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/2008.05.19.0803/
--->  Attempting to fetch 3dClustBust.c from http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/2008.05.19.0803/
--->  Attempting to fetch TTatlas+tlrc.BRIK.gz from http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/2008.05.19.0803/
--->  Attempting to fetch TTatlas+tlrc.HEAD from http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/2008.05.19.0803/
--->  Attempting to fetch CA_EZ_v1.5-July3107.tgz from http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/2008.05.19.0803/
--->  Attempting to fetch libGLw.a.tiger from http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/2008.05.19.0803/
--->  Verifying checksum(s) for afni-devel
--->  Extracting afni-devel
--->  Applying patches to afni-devel
--->  Configuring afni-devel
--->  Building afni-devel with target vastness
Error: Target org.macports.build returned: shell command " cd "/opt/ 
local/var/macports/build/_opt_local_MacPorts_MRI_science_afni-devel/ 
work/afni_src" && make vastness " returned error 2
Command output: cc -march=pentium-m -mtune=prescott -DDARWIN  - 
Wcomment -Wformat -DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp - 
DDONT_USE_MCW_MALLOC -O -I.. -O -I/usr/X11R6/include -I./ -I../ -Igts/ 
src -I/opt/local/include -I../nifti/niftilib -I../nifti/nifticdf -I../ 
nifti/znzlib -I../3DEdge/src   -c -o glut_menu.o glut_menu.c

... [a hundred or so similar lines deleted]

cc -march=pentium-m -mtune=prescott -DDARWIN  -Wcomment -Wformat - 
DUSE_TRACING -DHAVE_XDBE -no-cpp-precomp -DDONT_USE_MCW_MALLOC -O - 
DSUMA_COMPILED   -I/usr/X11R6/include -I./ -I../ -Igts/src -I/opt/ 
local/include -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/ 
znzlib -I../3DEdge/src -c SUMA_trackball.c
In file included from SUMA_trackball.c:1:
SUMA_suma.h:100:60: error: GL/GLwDrawA.h: No such file or directory
make[1]: *** [SUMA_trackball.o] Error 1
cp: SUMA/libSUMA.a: No such file or directory
cp: SUMA/libSUMA.a: No such file or directory
make: *** [libSUMA.a] Error 1

Error: Status 1 encountered during processing.
gratitude:~ omgoleus$

----


The errors are slightly different depending on whether I try afni,  
afni-latest, or afni-devel.  Google search found a message from  
someone a couple months ago on this list, but I didn't see any replies  
at all.  I just subscribed here in hopes that there will be some  
answer now!

Thanks in advance for any help you can offer.

--
-dave----------------------------------------------------------------
Where does the deep and philosophical begin, and where does the
loony and preposterous end?    -Salvador Dalí



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