py27-numeric is replaced by py24-numeric ???

JP Glutting jpglutting at gmail.com
Fri Jul 29 12:40:07 PDT 2011


No, I don't understand it either. In fact, I am not sure why Reportlab or
Biopython depend on numeric, if anything is should be numpy (there may be
some issues I don't understand, but Reportlab should only depend on the
PIL: http://www.reportlab.com/software/installation/ ). I don't really want
numeric, it is old and has been pretty much replaced by numpy, as far as I
am aware. Biopython specifically mentions NumPy, and Reportlab doesn't
mention either.

http://biopython.org/DIST/docs/install/Installation.html#htoc11

On Fri, Jul 29, 2011 at 2:56 PM, Jeremy Huddleston <jeremyhu at macports.org>wrote:

> Adding jmr.
>
> I'm not sure why you're seeing "is replaced by py24-numeric" because there
> is no py24-numeric.  You should use py-numeric.
>
>
> On Jul 29, 2011, at 11:51, Frank Schima wrote:
>
> > I see the same problem and it occurred because of selfupdate.
> >
> > $sudo port selfupdate
> > ....
> > $ port outdated
> > The following installed ports are outdated:
> > py26-numeric                   24.2_0 < 24.2_2
> > $ port installed py26-numeric
> > The following ports are currently installed:
> >  py26-numeric @24.2_0 (active)
> > $ sudo port upgrade py26-numeric
> > --->  py26-numeric is replaced by py24-numeric
> > ...
> >
> >
> >
> >
> > On Jul 29, 2011, at 11:35 AM, Jeremy Huddleston wrote:
> >
> >> port selfupdate
> >>
> >> On Jul 29, 2011, at 10:26, JP Glutting wrote:
> >>
> >>> I just tried to upgrade outdated packages, and the first message on the
> list
> >>> was:
> >>>
> >>> --> py27-numeric is replaced by py24-numeric
> >>>
> >>> I imagine that pyXX-numeric is deprecated, to fall back on
> py24-numeric, but
> >>> this affects py27-reportlab (which in turn affects py27-biopython,
> which is
> >>> what I want). It seems like it would be awkward to run biopython using
> >>> python 2.4. Especially since biopython is dropping python2.4 support (
> >>> http://news.open-bio.org/news/2010/11/dropping-python24-support/ ).
> >>>
> >>> Biopython should depend on numpy, not numeric. I can't see a ticket on
> this
> >>> yet. Should I open one?
> >>>
> >>> Thanks,
> >>> JP
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