py27-numeric is replaced by py24-numeric ???

[Scott Webster]

I just installed py27-biopython without incident on my snow leopard
system.  The dependencies that were installed because of this were:
py27-numeric
py27-tkinter
py27-pil
py27-reportlab

I already had everything else.

Scott

On Fri, Jul 29, 2011 at 12:40 PM, JP Glutting <jpglutting at gmail.com> wrote:
> No, I don't understand it either. In fact, I am not sure why Reportlab or
> Biopython depend on numeric, if anything is should be numpy (there may be
> some issues I don't understand, but Reportlab should only depend on the
> PIL: http://www.reportlab.com/software/installation/ ). I don't really want
> numeric, it is old and has been pretty much replaced by numpy, as far as I
> am aware. Biopython specifically mentions NumPy, and Reportlab doesn't
> mention either.
> http://biopython.org/DIST/docs/install/Installation.html#htoc11
>
> On Fri, Jul 29, 2011 at 2:56 PM, Jeremy Huddleston <jeremyhu at macports.org>
> wrote:
>>
>> Adding jmr.
>>
>> I'm not sure why you're seeing "is replaced by py24-numeric" because there
>> is no py24-numeric.  You should use py-numeric.
>>
>>
>> On Jul 29, 2011, at 11:51, Frank Schima wrote:
>>
>> > I see the same problem and it occurred because of selfupdate.
>> >
>> > $sudo port selfupdate
>> > ....
>> > $ port outdated
>> > The following installed ports are outdated:
>> > py26-numeric                   24.2_0 < 24.2_2
>> > $ port installed py26-numeric
>> > The following ports are currently installed:
>> >  py26-numeric @24.2_0 (active)
>> > $ sudo port upgrade py26-numeric
>> > --->  py26-numeric is replaced by py24-numeric
>> > ...
>> >
>> >
>> >
>> >
>> > On Jul 29, 2011, at 11:35 AM, Jeremy Huddleston wrote:
>> >
>> >> port selfupdate
>> >>
>> >> On Jul 29, 2011, at 10:26, JP Glutting wrote:
>> >>
>> >>> I just tried to upgrade outdated packages, and the first message on
>> >>> the list
>> >>> was:
>> >>>
>> >>> --> py27-numeric is replaced by py24-numeric
>> >>>
>> >>> I imagine that pyXX-numeric is deprecated, to fall back on
>> >>> py24-numeric, but
>> >>> this affects py27-reportlab (which in turn affects py27-biopython,
>> >>> which is
>> >>> what I want). It seems like it would be awkward to run biopython using
>> >>> python 2.4. Especially since biopython is dropping python2.4 support (
>> >>> http://news.open-bio.org/news/2010/11/dropping-python24-support/ ).
>> >>>
>> >>> Biopython should depend on numpy, not numeric. I can't see a ticket on
>> >>> this
>> >>> yet. Should I open one?
>> >>>
>> >>> Thanks,
>> >>> JP
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>> >>
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