py27-numeric is replaced by py24-numeric ???

[JP Glutting]

Thanks Scott. I'm running Lion with Macports 2.0. So that is good
information.


On Fri, Jul 29, 2011 at 3:54 PM, Scott Webster <sewebster at gmail.com> wrote:

> I just installed py27-biopython without incident on my snow leopard
> system.  The dependencies that were installed because of this were:
> py27-numeric
> py27-tkinter
> py27-pil
> py27-reportlab
>
> I already had everything else.
>
> Scott
>
> On Fri, Jul 29, 2011 at 12:40 PM, JP Glutting <jpglutting at gmail.com>
> wrote:
> > No, I don't understand it either. In fact, I am not sure why Reportlab or
> > Biopython depend on numeric, if anything is should be numpy (there may be
> > some issues I don't understand, but Reportlab should only depend on the
> > PIL: http://www.reportlab.com/software/installation/ ). I don't really
> want
> > numeric, it is old and has been pretty much replaced by numpy, as far as
> I
> > am aware. Biopython specifically mentions NumPy, and Reportlab doesn't
> > mention either.
> > http://biopython.org/DIST/docs/install/Installation.html#htoc11
> >
> > On Fri, Jul 29, 2011 at 2:56 PM, Jeremy Huddleston <
> jeremyhu at macports.org>
> > wrote:
> >>
> >> Adding jmr.
> >>
> >> I'm not sure why you're seeing "is replaced by py24-numeric" because
> there
> >> is no py24-numeric.  You should use py-numeric.
> >>
> >>
> >> On Jul 29, 2011, at 11:51, Frank Schima wrote:
> >>
> >> > I see the same problem and it occurred because of selfupdate.
> >> >
> >> > $sudo port selfupdate
> >> > ....
> >> > $ port outdated
> >> > The following installed ports are outdated:
> >> > py26-numeric                   24.2_0 < 24.2_2
> >> > $ port installed py26-numeric
> >> > The following ports are currently installed:
> >> >  py26-numeric @24.2_0 (active)
> >> > $ sudo port upgrade py26-numeric
> >> > --->  py26-numeric is replaced by py24-numeric
> >> > ...
> >> >
> >> >
> >> >
> >> >
> >> > On Jul 29, 2011, at 11:35 AM, Jeremy Huddleston wrote:
> >> >
> >> >> port selfupdate
> >> >>
> >> >> On Jul 29, 2011, at 10:26, JP Glutting wrote:
> >> >>
> >> >>> I just tried to upgrade outdated packages, and the first message on
> >> >>> the list
> >> >>> was:
> >> >>>
> >> >>> --> py27-numeric is replaced by py24-numeric
> >> >>>
> >> >>> I imagine that pyXX-numeric is deprecated, to fall back on
> >> >>> py24-numeric, but
> >> >>> this affects py27-reportlab (which in turn affects py27-biopython,
> >> >>> which is
> >> >>> what I want). It seems like it would be awkward to run biopython
> using
> >> >>> python 2.4. Especially since biopython is dropping python2.4 support
> (
> >> >>> http://news.open-bio.org/news/2010/11/dropping-python24-support/ ).
> >> >>>
> >> >>> Biopython should depend on numpy, not numeric. I can't see a ticket
> on
> >> >>> this
> >> >>> yet. Should I open one?
> >> >>>
> >> >>> Thanks,
> >> >>> JP
> >> >>> _______________________________________________
> >> >>> macports-users mailing list
> >> >>> macports-users at lists.macosforge.org
> >> >>> http://lists.macosforge.org/mailman/listinfo.cgi/macports-users
> >> >>
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> >> >
> >>
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> >
> >
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