deleted the software folder - PEBKAC

[plik]

Hi Ryan,

thank you very much for your help.

I executed "sudo port -f deactivate arb" & "sudo port activate arb". 
When I tryed to run ARB but I got this message:

############
Environment Variable ARBHOME was empty
Using ARBHOME='/opt/local'
Please wait while the program ARB is starting .....
luis:SH plik$ ARB: Loading '.arb_prop/ntree.arb'
file .arb_prop/ntree.arb not found
  database .arb_prop/ntree.arb created

-------------------- ARB-backtrace for 'received signal 11':
0   arb_ntree                           0x00000001000c6185 
GBK_dump_backtrace + 53
1   arb_ntree                           0x00000001000c8395 
sigsegv_handler_dump + 53
2   libSystem.B.dylib                   0x00007fff89b3d1ba _sigtramp + 26
3   arb_ntree                           0x00000001000ef537 gb_search + 1367
4   arb_ntree                           0x000000010012a107 
_Z15aw_create_shellP9AW_windowbbiiii + 183
5   arb_ntree                           0x0000000100132d56 
_ZN17AW_window_message4initEP7AW_rootPKcb + 102
6   arb_ntree                           0x000000010012433f 
_Z11aw_questionPKcS0_bS0_ + 303
7   arb_ntree                           0x00000001001247e7 
_Z11aw_ask_surePKcbS0_ + 23
8   arb_ntree                           0x000000010011e65a 
_Z29aw_create_selection_box_awarsP7AW_rootPKcS2_S2_S2_P17gb_data_base_typeb 
+ 442
9   arb_ntree                           0x000000010012b288 
_ZN7AW_root14init_variablesEP17gb_data_base_type + 296
10  arb_ntree                           0x000000010007db1b main + 139
11  arb_ntree                           0x0000000100004348 start + 52
12  ???                                 0x0000000000000001 0x0 + 1
-------------------- End of backtrace
[Terminating with signal 11]
file .arb_prop/status.arb not found
  database .arb_prop/status.arb created

-------------------- ARB-backtrace for 'received signal 11':
0   arb_ntree                           0x00000001000c6185 
GBK_dump_backtrace + 53
1   arb_ntree                           0x00000001000c8395 
sigsegv_handler_dump + 53
2   libSystem.B.dylib                   0x00007fff89b3d1ba _sigtramp + 26
3   arb_ntree                           0x00000001000ef537 gb_search + 1367
4   arb_ntree                           0x000000010012a107 
_Z15aw_create_shellP9AW_windowbbiiii + 183
5   arb_ntree                           0x0000000100132d56 
_ZN17AW_window_message4initEP7AW_rootPKcb + 102
6   arb_ntree                           0x000000010012433f 
_Z11aw_questionPKcS0_bS0_ + 303
7   arb_ntree                           0x00000001001247e7 
_Z11aw_ask_surePKcbS0_ + 23
8   arb_ntree                           0x000000010011e65a 
_Z29aw_create_selection_box_awarsP7AW_rootPKcS2_S2_S2_P17gb_data_base_typeb 
+ 442
9   arb_ntree                           0x000000010012b288 
_ZN7AW_root14init_variablesEP17gb_data_base_type + 296
10  arb_ntree                           0x0000000100124d30 
_Z13aw_initstatusv + 192
11  arb_ntree                           0x000000010007dad0 main + 64
12  arb_ntree                           0x0000000100004348 start + 52
13  ???                                 0x0000000000000001 0x0 + 1
-------------------- End of backtrace
[Terminating with signal 11]
ARB done
##############

I googled (is 'googled' correct english?) for "ARB-backtrace for 
'received signal 11'" and found a guy who had the same problem and 
solved it with an update of his .bash_profile - therefore, I put this 
into my .bash_profile:

##############
ARBHOME=/opt/local/share/arb;export ARBHOME    #specifies your path to 
the ARB directory
LD_LIBRARY_PATH=${ARBHOME}/lib:${LD_LIBRARY_PATH} export LD_LIBRARY_PATH
PATH=${ARBHOME}/bin:${PATH}
export PATH
##############

After this, ARB started properly. I am still excited how fast this 
problem has been solved and about the new commands I have learned!


Thank you very much!

George



Am 5/28/12 12:38 AM, schrieb Ryan Schmidt:
> On May 27, 2012, at 16:51, plik wrote:
>
>> Today I installed Macports for the subsequent installation of ARB. Everything went really fine until I tryed to start ARB. But actually, this is another problem.
> Once you solve the below, this is what you should tell us more about. What's not working?
>
>
>> Herewith, I would like to ask for help for the probably stupid things I did to solve the "ARB won't work" problem.
>>
>> I thought "maybe it is a good idea to re-install arb with Macports". Here is what I did:
>>
>> ###########
>> luis:~ plik$ sudo port install arb
>> --->   Computing dependencies for arb
>> --->   Cleaning arb
>> --->   Scanning binaries for linking errors: 98.7%
>> Warning: Error parsing file /opt/local/share/arb/lib/ARB.bundle: Error opening or reading file
>> --->   Scanning binaries for linking errors: 100.0%
>> --->   No broken files found.
> As you see that doesn't actually reinstall arb; it just tells you it's already installed. If you actually want to reinstall arb you need to:
>
> sudo port -n upgrade --force arb
>
> However I don't see any reason to do that at this time, until we hear more about what the actual problem is that started you down this path.
>
>
>> I thought "maybe it is a good idea to rm -rf the arb folder in /opt/local/share/". I did so.
> Not a good idea. :) To get it back, deactivate and re-activate arb:
>
> sudo port -f deactivate arb
> sudo port activate arb
>
>
>