Macports py26-numpy Issue on OS X Mavericks
david laxer
dbl001 at yahoo.com
Fri Nov 22 13:38:42 PST 2013
I did this:
701 sudo port -v selfupdate
703 sudo port upgrade outdated
Also, this:
733 port -qv installed > myports.txt
734 sudo port -f uninstall installed
735 sudo port clean all
and this:
sudo ./restore_ports.tcl myports.txt
>> Why does
/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/numpy/core/_methods.py already exist if it does not belong to a port?
I've done Ruby work in the past. Also, Boost installation. Could Brew cause this?
On Friday, November 22, 2013 1:30 PM, Ryan Schmidt <ryandesign at macports.org> wrote:
Remember to Reply All so this discussion remains on the mailing list and does not move to private email.
On Nov 22, 2013, at 15:26, david laxer wrote:
> Hi Ryan,
>
> I tried this:
>
> David-Laxers-MacBook-Pro:~ davidlaxer$ sudo port clean py26-numpy
> Password:
> ---> Cleaning py26-numpy
> David-Laxers-MacBook-Pro:~ davidlaxer$ sudo port clean python26
> ---> Cleaning python26
> David-Laxers-MacBook-Pro:~ davidlaxer$
>
> Next,
>
> David-Laxers-MacBook-Pro:~ davidlaxer$ sudo ./restore_ports.tcl myports.txt
> Warning: Skipping ncursesw (not in the ports tree)
> ---> Cleaning bzip2
> ---> Cleaning cctools-headers
> ---> Cleaning db_select
> ---> Cleaning expat
> ---> Cleaning expat
> ---> Cleaning fftw-3
> ---> Cleaning fftw-3
> ---> Cleaning gcc_select
> ---> Cleaning gmp
> ---> Cleaning gmp
> ---> Cleaning gperf
> ---> Cleaning gperf
> ---> Cleaning icu
> ---> Cleaning icu
> ---> Cleaning libffi
> ---> Cleaning libiconv
> ---> Cleaning libiconv
> ---> Cleaning llvm_select
> ---> Cleaning m4
> ---> Cleaning ncurses
> ---> Cleaning ncurses
> ---> Cleaning ncurses
> ---> Cleaning nosetests_select
> ---> Cleaning nspr
> ---> Cleaning nspr
> ---> Computing dependencies for pkgconfig
> ---> Cleaning pkgconfig
> ---> Computing dependencies for pkgconfig
> ---> Cleaning pkgconfig
> ---> Configuring py26-distribute
> Error: py26-distribute is obsolete, please install py26-setuptools instead.
> Error: org.macports.configure for port py26-distribute returned: obsolete port
> Please see the log file for port py26-distribute for details:
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py-distribute/py26-distribute/main.log
> ---> Cleaning python_select
> ---> Cleaning python_select
> ---> Computing dependencies for readline
> ---> Cleaning readline
> ---> Computing dependencies for readline
> ---> Cleaning readline
> ---> Computing dependencies for spidermonkey
> ---> Cleaning spidermonkey
> ---> Computing dependencies for spidermonkey185
> ---> Cleaning spidermonkey185
> ---> Cleaning tcl
> ---> Cleaning tcl
> ---> Cleaning tcp_wrappers
> ---> Cleaning xorg-bigreqsproto
> ---> Cleaning xorg-bigreqsproto
> ---> Cleaning xorg-inputproto
> ---> Cleaning xorg-inputproto
> ---> Cleaning xorg-kbproto
> ---> Cleaning xorg-kbproto
> ---> Cleaning xorg-libpthread-stubs
> ---> Cleaning xorg-renderproto
> ---> Cleaning xorg-scrnsaverproto
> ---> Cleaning xorg-util-macros
> ---> Cleaning xorg-util-macros
> ---> Cleaning xorg-xcmiscproto
> ---> Cleaning xorg-xcmiscproto
> ---> Cleaning xorg-xextproto
> ---> Cleaning xorg-xextproto
> ---> Cleaning xorg-xf86bigfontproto
> ---> Cleaning xorg-xproto
> ---> Cleaning xorg-xproto
> ---> Cleaning xorg-xtrans
> ---> Cleaning xorg-xtrans
> ---> Computing dependencies for dbus
> ---> Cleaning dbus
> ---> Computing dependencies for dbus
> ---> Cleaning dbus
> ---> Computing dependencies for gettext
> ---> Cleaning gettext
> ---> Computing dependencies for gettext
> ---> Cleaning gettext
> ---> Computing dependencies for libedit
> ---> Cleaning libedit
> ---> Computing dependencies for libidn
> ---> Cleaning libidn
> ---> Computing dependencies for libidn
> ---> Cleaning libidn
> ---> Computing dependencies for sqlite3
> ---> Cleaning sqlite3
> ---> Computing dependencies for sqlite3
> ---> Cleaning sqlite3
> ---> Computing dependencies for xorg-libXau
> ---> Cleaning xorg-libXau
> ---> Computing dependencies for xorg-libXau
> ---> Cleaning xorg-libXau
> ---> Cleaning xorg-libXdmcp
> ---> Cleaning xorg-libXdmcp
> ---> Computing dependencies for xz
> ---> Cleaning xz
> ---> Computing dependencies for xz
> ---> Cleaning xz
> ---> Computing dependencies for yasm
> ---> Cleaning yasm
> ---> Cleaning zlib
> ---> Cleaning zlib
> ---> Computing dependencies for gawk
> ---> Cleaning gawk
> ---> Computing dependencies for gawk
> ---> Cleaning gawk
> ---> Computing dependencies for gdbm
> ---> Cleaning gdbm
> ---> Computing dependencies for gdbm
> ---> Cleaning gdbm
> ---> Computing dependencies for glpk
> ---> Cleaning glpk
> ---> Computing dependencies for libpng
> ---> Cleaning libpng
> ---> Computing dependencies for libpng
> ---> Cleaning libpng
> ---> Computing dependencies for libxml2
> ---> Cleaning libxml2
> ---> Computing dependencies for libxml2
> ---> Cleaning libxml2
> ---> Computing dependencies for mpfr
> ---> Cleaning mpfr
> ---> Computing dependencies for mpfr
> ---> Cleaning mpfr
> ---> Computing dependencies for openssl
> ---> Cleaning openssl
> ---> Computing dependencies for openssl
> ---> Cleaning openssl
> ---> Computing dependencies for openssl
> ---> Cleaning openssl
> ---> Computing dependencies for perl5.12
> ---> Cleaning perl5.12
> ---> Computing dependencies for perl5.12
> ---> Cleaning perl5.12
> ---> Computing dependencies for ppl
> ---> Cleaning ppl
> ---> Computing dependencies for texinfo
> ---> Cleaning texinfo
> ---> Computing dependencies for freetype
> ---> Cleaning freetype
> ---> Computing dependencies for freetype
> ---> Cleaning freetype
> ---> Cleaning gzip
> ---> Cleaning gzip
> ---> Computing dependencies for libmpc
> ---> Cleaning libmpc
> ---> Computing dependencies for p5.12-locale-gettext
> ---> Cleaning p5.12-locale-gettext
> ---> Computing dependencies for perl5
> ---> Cleaning perl5
> ---> Computing dependencies for perl5
> ---> Cleaning perl5
> ---> Computing dependencies for autoconf
> ---> Cleaning autoconf
> ---> Computing dependencies for autoconf
> ---> Cleaning autoconf
> ---> Computing dependencies for autoconf213
> ---> Cleaning autoconf213
> ---> Computing dependencies for automake
> ---> Cleaning automake
> ---> Computing dependencies for automake
> ---> Cleaning automake
> ---> Cleaning curl-ca-bundle
> ---> Cleaning curl-ca-bundle
> ---> Cleaning curl-ca-bundle
> ---> Computing dependencies for erlang
> ---> Cleaning erlang
> ---> Computing dependencies for erlang
> ---> Cleaning erlang
> ---> Computing dependencies for fontconfig
> ---> Cleaning fontconfig
> ---> Computing dependencies for fontconfig
> ---> Cleaning fontconfig
> ---> Computing dependencies for glib2
> ---> Cleaning glib2
> ---> Computing dependencies for glib2
> ---> Cleaning glib2
> ---> Computing dependencies for help2man
> ---> Cleaning help2man
> ---> Computing dependencies for help2man
> ---> Cleaning help2man
> ---> Computing dependencies for libidl
> ---> Cleaning libidl
> ---> Computing dependencies for libidl
> ---> Cleaning libidl
> ---> Cleaning libtool
> ---> Cleaning libtool
> ---> Computing dependencies for llvm-3.3
> ---> Cleaning llvm-3.3
> ---> Computing dependencies for p5-locale-gettext
> ---> Cleaning p5-locale-gettext
> ---> Computing dependencies for curl
> ---> Cleaning curl
> ---> Computing dependencies for curl
> ---> Cleaning curl
> ---> Computing dependencies for curl
> ---> Cleaning curl
> ---> Computing dependencies for db46
> ---> Cleaning db46
> ---> Computing dependencies for db46
> ---> Cleaning db46
> ---> Computing dependencies for isl
> ---> Cleaning isl
> ---> Computing dependencies for ld64
> ---> Cleaning ld64
> ---> Computing dependencies for python26
> ---> Cleaning python26
> ---> Computing dependencies for python26
> ---> Cleaning python26
> ---> Computing dependencies for python27
> ---> Cleaning python27
> ---> Computing dependencies for python27
> ---> Cleaning python27
> ---> Computing dependencies for xorg-xcb-proto
> ---> Cleaning xorg-xcb-proto
> ---> Computing dependencies for xorg-xcb-proto
> ---> Cleaning xorg-xcb-proto
> ---> Computing dependencies for boost
> ---> Cleaning boost
> ---> Computing dependencies for cctools
> ---> Cleaning cctools
> ---> Computing dependencies for cloog
> ---> Cleaning cloog
> ---> Computing dependencies for couchdb
> ---> Cleaning couchdb
> ---> Computing dependencies for couchdb
> ---> Cleaning couchdb
> ---> Computing dependencies for libgcc
> ---> Cleaning libgcc
> ---> Computing dependencies for libgcc45
> ---> Cleaning libgcc45
> ---> Computing dependencies for llvm-gcc42
> ---> Cleaning llvm-gcc42
> ---> Computing dependencies for mysql5
> ---> Cleaning mysql5
> ---> Computing dependencies for mysql5
> ---> Cleaning mysql5
> ---> Computing dependencies for mysql5
> ---> Cleaning mysql5
> ---> Computing dependencies for mysql5-server
> ---> Cleaning mysql5-server
> ---> Computing dependencies for mysql5-server
> ---> Cleaning mysql5-server
> ---> Computing dependencies for mysql5-server
> ---> Cleaning mysql5-server
> ---> Computing dependencies for py26-configobj
> ---> Cleaning py26-configobj
> ---> Computing dependencies for py26-configobj
> ---> Cleaning py26-configobj
> ---> Computing dependencies for py26-parsing
> ---> Cleaning py26-parsing
> ---> Computing dependencies for py26-setuptools
> ---> Cleaning py26-setuptools
> ---> Computing dependencies for py26-six
> ---> Cleaning py26-six
> ---> Computing dependencies for py26-tornado
> ---> Cleaning py26-tornado
> ---> Computing dependencies for py26-tz
> ---> Cleaning py26-tz
> ---> Computing dependencies for py26-tz
> ---> Cleaning py26-tz
> ---> Computing dependencies for py27-setuptools
> ---> Cleaning py27-setuptools
> ---> Computing dependencies for xorg-libxcb
> ---> Cleaning xorg-libxcb
> ---> Computing dependencies for xorg-libxcb
> ---> Cleaning xorg-libxcb
> ---> Computing dependencies for gcc44
> ---> Cleaning gcc44
> ---> Computing dependencies for gcc44
> ---> Cleaning gcc44
> ---> Computing dependencies for gcc47
> ---> Cleaning gcc47
> ---> Computing dependencies for py26-altgraph
> ---> Cleaning py26-altgraph
> ---> Computing dependencies for py26-altgraph
> ---> Cleaning py26-altgraph
> ---> Computing dependencies for py26-bdist_mpkg
> ---> Cleaning py26-bdist_mpkg
> ---> Computing dependencies for py26-bdist_mpkg
> ---> Cleaning py26-bdist_mpkg
> ---> Computing dependencies for py26-dateutil
> ---> Cleaning py26-dateutil
> ---> Computing dependencies for py26-dateutil
> ---> Cleaning py26-dateutil
> ---> Computing dependencies for py26-modulegraph
> ---> Cleaning py26-modulegraph
> ---> Computing dependencies for py26-modulegraph
> ---> Cleaning py26-modulegraph
> ---> Computing dependencies for py26-nose
> ---> Cleaning py26-nose
> ---> Computing dependencies for py26-nose
> ---> Cleaning py26-nose
> ---> Computing dependencies for py27-roman
> ---> Cleaning py27-roman
> ---> Computing dependencies for xorg-libX11
> ---> Cleaning xorg-libX11
> ---> Computing dependencies for xorg-libX11
> ---> Cleaning xorg-libX11
> ---> Computing dependencies for xorg-libXext
> ---> Cleaning xorg-libXext
> ---> Computing dependencies for xorg-libXScrnSaver
> ---> Cleaning xorg-libXScrnSaver
> ---> Computing dependencies for xrender
> ---> Cleaning xrender
> ---> Computing dependencies for atlas
> ---> Cleaning atlas
> ---> Computing dependencies for atlas
> ---> Cleaning atlas
> ---> Computing dependencies for py26-macholib
> ---> Cleaning py26-macholib
> ---> Computing dependencies for py26-macholib
> ---> Cleaning py26-macholib
> ---> Computing dependencies for py26-py2app
> ---> Cleaning py26-py2app
> ---> Computing dependencies for py26-py2app
> ---> Cleaning py26-py2app
> ---> Computing dependencies for py26-pyobjc
> ---> Cleaning py26-pyobjc
> ---> Computing dependencies for py26-pyobjc
> ---> Cleaning py26-pyobjc
> ---> Computing dependencies for py26-pyobjc-cocoa
> ---> Cleaning py26-pyobjc-cocoa
> ---> Computing dependencies for py26-pyobjc-cocoa
> ---> Cleaning py26-pyobjc-cocoa
> ---> Computing dependencies for py27-docutils
> ---> Cleaning py27-docutils
> ---> Computing dependencies for tk
> ---> Cleaning tk
> ---> Computing dependencies for tk
> ---> Cleaning tk
> ---> Computing dependencies for Xft2
> ---> Cleaning Xft2
> ---> Computing dependencies for mercurial
> ---> Cleaning mercurial
> ---> Computing dependencies for mercurial
> ---> Cleaning mercurial
> ---> Computing dependencies for py26-tkinter
> ---> Cleaning py26-tkinter
> ---> Computing dependencies for py26-tkinter
> ---> Cleaning py26-tkinter
> ---> Computing dependencies for py26-matplotlib
> ---> Dependencies to be installed: py26-numpy
> ---> Activating py26-numpy @1.8.0_0
> Error: org.macports.activate for port py26-numpy returned: Image error: /opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/numpy/core/_methods.py already exists and does not belong to a registered port. Unable to activate port py26-numpy. Use 'port -f activate py26-numpy' to force the activation.
> Error: Failed to install py26-numpy
> Please see the log file for port py26-numpy for details:
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py-numpy/py26-numpy/main.log
> Error: The following dependencies were not installed: py26-numpy
> David-Laxers-MacBook-Pro:~ davidlaxer$
Why does /opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/numpy/core/_methods.py already exist if it does not belong to a port?
Did you previously have this port installed, and then uninstall MacPorts? If so, how did you uninstall MacPorts?
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