Macports py26-numpy Issue on OS X Mavericks

[Ryan Schmidt]

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On Nov 22, 2013, at 15:26, david laxer wrote:

> Hi Ryan,
> 
> I tried this:
> 
> David-Laxers-MacBook-Pro:~ davidlaxer$ sudo port clean py26-numpy
> Password:
> --->  Cleaning py26-numpy
> David-Laxers-MacBook-Pro:~ davidlaxer$ sudo port clean python26
> --->  Cleaning python26
> David-Laxers-MacBook-Pro:~ davidlaxer$ 
> 
> Next, 
> 
> David-Laxers-MacBook-Pro:~ davidlaxer$ sudo ./restore_ports.tcl myports.txt
> Warning: Skipping ncursesw (not in the ports tree)
> --->  Cleaning bzip2
> --->  Cleaning cctools-headers
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> --->  Cleaning ncurses
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> --->  Cleaning nspr
> --->  Computing dependencies for pkgconfig
> --->  Cleaning pkgconfig
> --->  Computing dependencies for pkgconfig
> --->  Cleaning pkgconfig
> --->  Configuring py26-distribute
> Error: py26-distribute is obsolete, please install py26-setuptools instead.
> Error: org.macports.configure for port py26-distribute returned: obsolete port
> Please see the log file for port py26-distribute for details:
>     /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py-distribute/py26-distribute/main.log

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> --->  Computing dependencies for llvm-3.3
> --->  Cleaning llvm-3.3
> --->  Computing dependencies for p5-locale-gettext
> --->  Cleaning p5-locale-gettext
> --->  Computing dependencies for curl
> --->  Cleaning curl
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> --->  Cleaning isl
> --->  Computing dependencies for ld64
> --->  Cleaning ld64
> --->  Computing dependencies for python26
> --->  Cleaning python26
> --->  Computing dependencies for python26
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> --->  Cleaning python27
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> --->  Cleaning python27
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> --->  Cleaning boost
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> --->  Cleaning cctools
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> --->  Cleaning couchdb
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> --->  Computing dependencies for libgcc
> --->  Cleaning libgcc
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> --->  Cleaning libgcc45
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> --->  Cleaning llvm-gcc42
> --->  Computing dependencies for mysql5
> --->  Cleaning mysql5
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> --->  Computing dependencies for mysql5-server
> --->  Cleaning mysql5-server
> --->  Computing dependencies for mysql5-server
> --->  Cleaning mysql5-server
> --->  Computing dependencies for py26-configobj
> --->  Cleaning py26-configobj
> --->  Computing dependencies for py26-configobj
> --->  Cleaning py26-configobj
> --->  Computing dependencies for py26-parsing
> --->  Cleaning py26-parsing
> --->  Computing dependencies for py26-setuptools
> --->  Cleaning py26-setuptools
> --->  Computing dependencies for py26-six
> --->  Cleaning py26-six
> --->  Computing dependencies for py26-tornado
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> --->  Computing dependencies for py26-tz
> --->  Cleaning py26-tz
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> --->  Cleaning py26-tz
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> --->  Cleaning xorg-libxcb
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> --->  Cleaning xorg-libxcb
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> --->  Cleaning gcc44
> --->  Computing dependencies for gcc44
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> --->  Cleaning gcc47
> --->  Computing dependencies for py26-altgraph
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> --->  Computing dependencies for py26-altgraph
> --->  Cleaning py26-altgraph
> --->  Computing dependencies for py26-bdist_mpkg
> --->  Cleaning py26-bdist_mpkg
> --->  Computing dependencies for py26-bdist_mpkg
> --->  Cleaning py26-bdist_mpkg
> --->  Computing dependencies for py26-dateutil
> --->  Cleaning py26-dateutil
> --->  Computing dependencies for py26-dateutil
> --->  Cleaning py26-dateutil
> --->  Computing dependencies for py26-modulegraph
> --->  Cleaning py26-modulegraph
> --->  Computing dependencies for py26-modulegraph
> --->  Cleaning py26-modulegraph
> --->  Computing dependencies for py26-nose
> --->  Cleaning py26-nose
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> --->  Cleaning py26-nose
> --->  Computing dependencies for py27-roman
> --->  Cleaning py27-roman
> --->  Computing dependencies for xorg-libX11
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> --->  Cleaning xrender
> --->  Computing dependencies for atlas
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> --->  Cleaning atlas
> --->  Computing dependencies for py26-macholib
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> --->  Computing dependencies for py26-macholib
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> --->  Computing dependencies for py26-py2app
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> --->  Cleaning py26-py2app
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> --->  Cleaning py26-pyobjc
> --->  Computing dependencies for py26-pyobjc
> --->  Cleaning py26-pyobjc
> --->  Computing dependencies for py26-pyobjc-cocoa
> --->  Cleaning py26-pyobjc-cocoa
> --->  Computing dependencies for py26-pyobjc-cocoa
> --->  Cleaning py26-pyobjc-cocoa
> --->  Computing dependencies for py27-docutils
> --->  Cleaning py27-docutils
> --->  Computing dependencies for tk
> --->  Cleaning tk
> --->  Computing dependencies for tk
> --->  Cleaning tk
> --->  Computing dependencies for Xft2
> --->  Cleaning Xft2
> --->  Computing dependencies for mercurial
> --->  Cleaning mercurial
> --->  Computing dependencies for mercurial
> --->  Cleaning mercurial
> --->  Computing dependencies for py26-tkinter
> --->  Cleaning py26-tkinter
> --->  Computing dependencies for py26-tkinter
> --->  Cleaning py26-tkinter
> --->  Computing dependencies for py26-matplotlib
> --->  Dependencies to be installed: py26-numpy
> --->  Activating py26-numpy @1.8.0_0
> Error: org.macports.activate for port py26-numpy returned: Image error: /opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/numpy/core/_methods.py already exists and does not belong to a registered port.  Unable to activate port py26-numpy. Use 'port -f activate py26-numpy' to force the activation.
> Error: Failed to install py26-numpy
> Please see the log file for port py26-numpy for details:
>     /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py-numpy/py26-numpy/main.log
> Error: The following dependencies were not installed: py26-numpy
> David-Laxers-MacBook-Pro:~ davidlaxer$ 

Why does /opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/numpy/core/_methods.py already exist if it does not belong to a port?

Did you previously have this port installed, and then uninstall MacPorts? If so, how did you uninstall MacPorts?