Blocked from cleaning packages due to h5pcc

[Ryan Schmidt]

On Aug 16, 2014, at 2:02 PM, Matt Thompson wrote:
> 
> Takeshi,
> 
> I saw there was a new cdo port today, but when I try to upgrade it I get (discounting the ever present DNS warning):

The DNS warning will continue until you switch to DNS servers that work properly :)

> --->  Computing dependencies for cdo
> --->  Fetching archive for cdo
> Warning: Your DNS servers incorrectly claim to know the address of nonexistent hosts. This may cause checksum mismatches for some ports. See this page for more information: <https://trac.macports.org/wiki/MisbehavingServers>
> --->  Attempting to fetch cdo-1.6.4_0+grib_api+openmpi+szip.darwin_13.x86_64.tbz2 from http://packages.macports.org/cdo
> --->  Attempting to fetch cdo-1.6.4_0+grib_api+openmpi+szip.darwin_13.x86_64.tbz2 from http://lil.fr.packages.macports.org/cdo
> --->  Attempting to fetch cdo-1.6.4_0+grib_api+openmpi+szip.darwin_13.x86_64.tbz2 from http://nue.de.packages.macports.org/macports/packages/cdo
> --->  Fetching distfiles for cdo
> --->  Attempting to fetch cdo-1.6.4.tar.gz from http://ykf.ca.distfiles.macports.org/MacPorts/mpdistfiles/cdo
> --->  Attempting to fetch cdo-1.6.4.tar.gz from http://distfiles.macports.org/cdo
> --->  Verifying checksums for cdo                                                    
> --->  Extracting cdo
> --->  Configuring cdo
> Error: /opt/local/bin/h5pcc not found. Install hdf5 with an mpi variant
> Error: org.macports.configure for port cdo returned: 
> Please see the log file for port cdo for details:
>     /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/main.log
> Error: Unable to upgrade port: 1
> To report a bug, follow the instructions in the guide:
>     http://guide.macports.org/#project.tickets
> 
> How will I know when your patch is has been applied? Or, do I need to run some port command to "clean out" something?

If you ran "sudo port selfupdate", then you have already received the fix.

As the message says, you need to install hdf5 with an mpi variant.