dolfin 1.5.0 and OS X 10.9

[Sean Farley]

Gideon Simpson writes:

> On one my machines I still have 10.9 installed and with the recent update to dolfin (which works fine on my 10.10 machine), I now get errors during the build: 
>
> _opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/function && /opt/local/bin/swig -python -module function -shadow -modern -modernargs -fastdispatch -fvirtual -nosafecstrings -noproxydel -fastproxy -fastinit -fastunpack -fastquery -nobuildnone -Iinclude/swig -DBOOST_UBLAS_NDEBUG -DDOLFIN_SIZE_T=8 -DDOLFIN_LA_INDEX_SIZE=4 -DHAS_UMFPACK -DHAS_CHOLMOD -DHAS_ZLIB -DHAS_MPI -DHAS_QT4 -DHAS_VTK -DNUMPY_VERSION_MAJOR=1 -DNUMPY_VERSION_MINOR=8 -DNUMPY_VERSION_MICRO=2 -DNPY_NO_DEPRECATED_API=NPY_1_8_API_VERSION -outdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/function -c++ -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build -I/opt/local/include -I/opt/local/include/QtGui -I/opt/lo
>  cal/include/QtCore -I/opt/local/include/vtk-6.1 -I/usr/include/python2.7 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0 -I/opt/local/include/libxml2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include -I/opt/local/include/mpich-mp -I/opt/local/include/eigen3 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -o /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/function/modulePYTHON_wrap.cxx /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/function/module.i
> :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/la/module.i:137: Error: Unable to find 'dolfin/swig/la/docstrings.i'
> :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/la/module.i:138: Error: Unable to find 'dolfin/swig/nls/docstrings.i'
> :info:build make[2]: *** [dolfin/swig/modules/la/modulePYTHON_wrap.cxx] Error 1
> :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build'
> :info:build make[1]: *** [dolfin/swig/modules/la/CMakeFiles/_la.dir/all] Error 2
> :info:build make[1]: *** Waiting for unfinished jobs....
> :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/common/module.i:78: Error: Unable to find 'dolfin/swig/common/docstrings.i'
> :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/common/module.i:79: Error: Unable to find 'dolfin/swig/parameter/docstrings.i'
> :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/common/module.i:80: Error: Unable to find 'dolfin/swig/log/docstrings.i'
> :info:build make[2]: *** [dolfin/swig/modules/common/modulePYTHON_wrap.cxx] Error 1
> :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build'
> :info:build make[1]: *** [dolfin/swig/modules/common/CMakeFiles/_common.dir/all] Error 2
> :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/mesh/module.i:160: Error: Unable to find 'dolfin/swig/mesh/docstrings.i'
> :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/mesh/module.i:161: Error: Unable to find 'dolfin/swig/generation/docstrings.i'
> :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/mesh/module.i:162: Error: Unable to find 'dolfin/swig/geometry/docstrings.i'
> :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/mesh/module.i:163: Error: Unable to find 'dolfin/swig/refinement/docstrings.i'
> :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/mesh/module.i:164: Error: Unable to find 'dolfin/swig/graph/docstrings.i'
> :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/fem/module.i:193: Error: Unable to find 'dolfin/swig/fem/docstrings.i'
> :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/fem/module.i:194: Error: Unable to find 'dolfin/swig/multistage/docstrings.i'
> :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/fem/module.i:195: Error: Unable to find 'dolfin/swig/adaptivity/docstrings.i'
> :info:build make[2]: *** [dolfin/swig/modules/fem/modulePYTHON_wrap.cxx] Error 1
> :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build'
> :info:build make[1]: *** [dolfin/swig/modules/fem/CMakeFiles/_fem.dir/all] Error 2
> :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/function/module.i:145: Error: Unable to find 'dolfin/swig/function/docstrings.i'
> :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/function/module.i:146: Error: Unable to find 'dolfin/swig/math/docstrings.i'
> :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/function/module.i:147: Error: Unable to find 'dolfin/swig/ale/docstrings.i'
> :info:build make[2]: *** [dolfin/swig/modules/function/modulePYTHON_wrap.cxx] Error 1
> :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build'
> :info:build make[1]: *** [dolfin/swig/modules/function/CMakeFiles/_function.dir/all] Error 2
> :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/io/module.i:149: Error: Unable to find 'dolfin/swig/plot/docstrings.i'
> :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build/dolfin/swig/modules/io/module.i:150: Error: Unable to find 'dolfin/swig/io/docstrings.i'
> :info:build make[2]: *** [dolfin/swig/modules/io/modulePYTHON_wrap.cxx] Error 1
> :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build'
> :info:build make[1]: *** [dolfin/swig/modules/io/CMakeFiles/_io.dir/all] Error 2
> :info:build make[2]: *** [dolfin/swig/modules/mesh/modulePYTHON_wrap.cxx] Error 1
> :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build'
> :info:build make[1]: *** [dolfin/swig/modules/mesh/CMakeFiles/_mesh.dir/all] Error 2
> :info:build make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build'
> :info:build make: *** [all] Error 2
> :info:build make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build'
> :info:build Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/work/dolfin-1.5.0/build" && /usr/bin/make -j12 -w all 
> :info:build Exit code: 2
> :error:build org.macports.build for port dolfin returned: command execution failed
> :debug:build Error code: CHILDSTATUS 23177 2
> :debug:build Backtrace: command execution failed
>     while executing
> "system -nice 0 $fullcmdstring"
>     ("eval" body line 1)
>     invoked from within
> "eval system $notty $nice \$fullcmdstring"
>     invoked from within
> "command_exec build"
>     (procedure "portbuild::build_main" line 8)
>     invoked from within
> "portbuild::build_main org.macports.build"
>     ("eval" body line 1)
>     invoked from within
> "eval $procedure $targetname"
> :info:build Warning: targets not executed for dolfin: org.macports.activate org.macports.build org.macports.destroot org.macports.install
> :notice:build Please see the log file for port dolfin for details:
>     /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/main.log

We usually recommend opening a ticket at trac.macports.org for these
kind of failures. But before you do that, could you make sure your swig
port is up-to-date and then clean & rebuild dolfin? If that fails,
please open a ticket.