xcrysden on Ventura

Zhu, Jianxin jxzhu at lanl.gov
Sun Mar 12 00:14:19 UTC 2023


Hello,

I recently upgraded my Macbook computer (intel processor) OS to Ventura and reinstalled MacPorts.
After I port installed xcrysden (1.6.2), I try to visualize a Wien2k struct file.
But the program is stuck at the following and no image comes up.
Any help is appreciated.

Thanks,

Jianxin


+-----------------------------------------------------------------+

|*****************************************************************|

|*                                                               *|

|*  XCrySDen -- (X-Window) CRYstalline Structures and DENsities  *|

|*               =         ===         =              ===        *|

|*---------------------------------------------------------------*|

|*                                                               *|

|*    Anton Kokalj (tone.kokalj at ijs.si<mailto:tone.kokalj at ijs.si>)                          *|

|*    Jozef Stefan Institute, Ljubljana, Slovenia                *|

|*                                                               *|

|*    Copyright (c) 1996--2019 by Anton Kokalj                   *|

|*                                                               *|

|*****************************************************************|

+-----------------------------------------------------------------+



  Version: 1.6.2



  Please report bugs to: tone.kokalj at ijs.si<mailto:tone.kokalj at ijs.si>





  TERMS OF USE:

  -------------

  XCRYSDEN is released under the GNU General Public License.



  Whenever graphics generated by XCRYSDEN are used in scientific

  publications, it shall be greatly appreciated to include an explicit

  reference. The preferred form is the following:



  [ref] A. Kokalj, J. Mol. Graph. Model., Vol. 17, pp. 176-179, 1999.

        Code available from http://www.xcrysden.org/.



XCRYSDEN_TOPDIR=/opt/local/share/xcrysden-1.6.2

XCRYSDEN_SCRATCH=/var/folders/d6/987tghwd307_6djp3bhs765c0000gp/T/



Running on platform : unix

   Operating system : Darwin

Package ImageMagick's convert: /opt/local/bin/convert

Package ImageMagick's import: /opt/local/bin/import

Package Gifsicle: /opt/local/bin/gifsicle

Package Whirlgif: /opt/local/bin/whirlgif

Package Mencoder: /opt/local/bin/mencoder

Package Ppmtompeg: /opt/local/bin/ppmtompeg

Package Xwd: /opt/X11/bin/xwd

Executing: /opt/local/lib/xcrysden-1.6.2/ftnunit

Viewer: mesaWid = .mesa

Executing: /opt/local/lib/xcrysden-1.6.2/str2xcr TiC

SetWatchCursor: .menu

SetWatchCursor: .mesa

SetWatchCursor: .ctrl

SetWatchCursor: .mea

SetWatchCursor: .close

SetWatchCursor: .#BWidget

SetWatchCursor: .__tk_filedialog

Executing: /opt/local/lib/xcrysden-1.6.2/gengeom 0 1 21 1 1 1 1 /var/folders/d6/987tghwd307_6djp3bhs765c0000gp/T//xc_95436/xc_gengeom.95436 /var/folders/d6/987tghwd307_6djp3bhs765c0000gp/T//xc_95436/xc_str2xcr.95436

SetWatchCursor: .menu

SetWatchCursor: .mesa

SetWatchCursor: .ctrl

SetWatchCursor: .mea

SetWatchCursor: .close

SetWatchCursor: .#BWidget

SetWatchCursor: .__tk_filedialog

Executing: /opt/local/lib/xcrysden-1.6.2/gengeom 2 1 21 5 1 1 1 /var/folders/d6/987tghwd307_6djp3bhs765c0000gp/T//xc_95436/xc_struc.95436 /var/folders/d6/987tghwd307_6djp3bhs765c0000gp/T//xc_95436/xc_str2xcr.95436

SetWatchCursor: .menu

SetWatchCursor: .mesa

SetWatchCursor: .ctrl

SetWatchCursor: .mea

SetWatchCursor: .close

SetWatchCursor: .#BWidget

SetWatchCursor: .__tk_filedialog

reading PRIMCOORD

reading CONVCOORD

Number of Atoms:  27

Number of Frames: 12

natoms: 27 , ndel: 0

Filtered number of atoms: 27

Estimated number of bonds = 108

sInfo(dim) = 3; periodic(dim) = 3



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