xcrysden on Ventura
Zhu, Jianxin
jxzhu at lanl.gov
Sun Mar 12 00:14:19 UTC 2023
Hello,
I recently upgraded my Macbook computer (intel processor) OS to Ventura and reinstalled MacPorts.
After I port installed xcrysden (1.6.2), I try to visualize a Wien2k struct file.
But the program is stuck at the following and no image comes up.
Any help is appreciated.
Thanks,
Jianxin
+-----------------------------------------------------------------+
|*****************************************************************|
|* *|
|* XCrySDen -- (X-Window) CRYstalline Structures and DENsities *|
|* = === = === *|
|*---------------------------------------------------------------*|
|* *|
|* Anton Kokalj (tone.kokalj at ijs.si<mailto:tone.kokalj at ijs.si>) *|
|* Jozef Stefan Institute, Ljubljana, Slovenia *|
|* *|
|* Copyright (c) 1996--2019 by Anton Kokalj *|
|* *|
|*****************************************************************|
+-----------------------------------------------------------------+
Version: 1.6.2
Please report bugs to: tone.kokalj at ijs.si<mailto:tone.kokalj at ijs.si>
TERMS OF USE:
-------------
XCRYSDEN is released under the GNU General Public License.
Whenever graphics generated by XCRYSDEN are used in scientific
publications, it shall be greatly appreciated to include an explicit
reference. The preferred form is the following:
[ref] A. Kokalj, J. Mol. Graph. Model., Vol. 17, pp. 176-179, 1999.
Code available from http://www.xcrysden.org/.
XCRYSDEN_TOPDIR=/opt/local/share/xcrysden-1.6.2
XCRYSDEN_SCRATCH=/var/folders/d6/987tghwd307_6djp3bhs765c0000gp/T/
Running on platform : unix
Operating system : Darwin
Package ImageMagick's convert: /opt/local/bin/convert
Package ImageMagick's import: /opt/local/bin/import
Package Gifsicle: /opt/local/bin/gifsicle
Package Whirlgif: /opt/local/bin/whirlgif
Package Mencoder: /opt/local/bin/mencoder
Package Ppmtompeg: /opt/local/bin/ppmtompeg
Package Xwd: /opt/X11/bin/xwd
Executing: /opt/local/lib/xcrysden-1.6.2/ftnunit
Viewer: mesaWid = .mesa
Executing: /opt/local/lib/xcrysden-1.6.2/str2xcr TiC
SetWatchCursor: .menu
SetWatchCursor: .mesa
SetWatchCursor: .ctrl
SetWatchCursor: .mea
SetWatchCursor: .close
SetWatchCursor: .#BWidget
SetWatchCursor: .__tk_filedialog
Executing: /opt/local/lib/xcrysden-1.6.2/gengeom 0 1 21 1 1 1 1 /var/folders/d6/987tghwd307_6djp3bhs765c0000gp/T//xc_95436/xc_gengeom.95436 /var/folders/d6/987tghwd307_6djp3bhs765c0000gp/T//xc_95436/xc_str2xcr.95436
SetWatchCursor: .menu
SetWatchCursor: .mesa
SetWatchCursor: .ctrl
SetWatchCursor: .mea
SetWatchCursor: .close
SetWatchCursor: .#BWidget
SetWatchCursor: .__tk_filedialog
Executing: /opt/local/lib/xcrysden-1.6.2/gengeom 2 1 21 5 1 1 1 /var/folders/d6/987tghwd307_6djp3bhs765c0000gp/T//xc_95436/xc_struc.95436 /var/folders/d6/987tghwd307_6djp3bhs765c0000gp/T//xc_95436/xc_str2xcr.95436
SetWatchCursor: .menu
SetWatchCursor: .mesa
SetWatchCursor: .ctrl
SetWatchCursor: .mea
SetWatchCursor: .close
SetWatchCursor: .#BWidget
SetWatchCursor: .__tk_filedialog
reading PRIMCOORD
reading CONVCOORD
Number of Atoms: 27
Number of Frames: 12
natoms: 27 , ndel: 0
Filtered number of atoms: 27
Estimated number of bonds = 108
sInfo(dim) = 3; periodic(dim) = 3
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